| Sequence 1: | NP_001261796.1 | Gene: | trn / 39491 | FlyBaseID: | FBgn0010452 | Length: | 751 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_110483.2 | Gene: | Lrrn3 / 81514 | RGDID: | 71066 | Length: | 707 | Species: | Rattus norvegicus |
| Alignment Length: | 476 | Identity: | 128/476 - (26%) |
|---|---|---|---|
| Similarity: | 204/476 - (42%) | Gaps: | 60/476 - (12%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 17 ASIGVEPAAGLA------------NCPPGCQCD-----------DNTLVVQCGEGQLDVLPIALN 58
Fly 59 PSIQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISN 123
Fly 124 KTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDN 188
Fly 189 ALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQEL 253
Fly 254 RILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTG 318
Fly 319 AFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEG-LFPWKDLQTLDLSEN 382
Fly 383 PLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRGESLR--HLNPAMMGCTHADPRKQALIG 445
Fly 446 ALLVGSAATITALALVLYRCR 466 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| trn | NP_001261796.1 | leucine-rich repeat | 62..80 | CDD:275380 | 6/17 (35%) |
| LRR | 82..406 | CDD:443914 | 92/324 (28%) | ||
| leucine-rich repeat | 84..107 | CDD:275380 | 8/22 (36%) | ||
| leucine-rich repeat | 108..131 | CDD:275380 | 8/22 (36%) | ||
| leucine-rich repeat | 132..155 | CDD:275380 | 6/22 (27%) | ||
| leucine-rich repeat | 156..179 | CDD:275380 | 7/22 (32%) | ||
| leucine-rich repeat | 180..204 | CDD:275380 | 7/23 (30%) | ||
| leucine-rich repeat | 205..228 | CDD:275380 | 5/22 (23%) | ||
| leucine-rich repeat | 229..252 | CDD:275380 | 7/22 (32%) | ||
| leucine-rich repeat | 253..276 | CDD:275380 | 9/22 (41%) | ||
| leucine-rich repeat | 277..300 | CDD:275380 | 7/22 (32%) | ||
| leucine-rich repeat | 301..322 | CDD:275380 | 6/20 (30%) | ||
| leucine-rich repeat | 326..350 | CDD:275380 | 5/23 (22%) | ||
| leucine-rich repeat | 351..373 | CDD:275380 | 7/22 (32%) | ||
| LRRCT | 382..434 | CDD:214507 | 14/53 (26%) | ||
| Lrrn3 | NP_110483.2 | LRRNT | 28..72 | CDD:214470 | 10/43 (23%) |
| LRR 1 | 70..91 | 6/20 (30%) | |||
| leucine-rich repeat | 72..93 | CDD:275380 | 7/20 (35%) | ||
| LRR | 76..>370 | CDD:443914 | 91/318 (29%) | ||
| LRR 2 | 93..114 | 8/20 (40%) | |||
| leucine-rich repeat | 94..117 | CDD:275380 | 8/22 (36%) | ||
| LRR 3 | 117..138 | 6/20 (30%) | |||
| leucine-rich repeat | 118..141 | CDD:275380 | 8/22 (36%) | ||
| LRR 4 | 141..162 | 5/20 (25%) | |||
| leucine-rich repeat | 142..165 | CDD:275380 | 6/22 (27%) | ||
| LRR 5 | 165..186 | 6/20 (30%) | |||
| leucine-rich repeat | 166..189 | CDD:275380 | 7/22 (32%) | ||
| LRR 6 | 189..210 | 10/45 (22%) | |||
| leucine-rich repeat | 190..213 | CDD:275380 | 12/47 (26%) | ||
| LRR 7 | 213..234 | 5/20 (25%) | |||
| leucine-rich repeat | 214..237 | CDD:275380 | 7/22 (32%) | ||
| LRR 8 | 237..258 | 8/20 (40%) | |||
| leucine-rich repeat | 238..261 | CDD:275380 | 9/22 (41%) | ||
| LRR 9 | 261..282 | 7/20 (35%) | |||
| leucine-rich repeat | 262..285 | CDD:275380 | 7/22 (32%) | ||
| LRR 10 | 285..304 | 5/18 (28%) | |||
| leucine-rich repeat | 286..310 | CDD:275380 | 6/23 (26%) | ||
| LRR 11 | 310..332 | 4/21 (19%) | |||
| leucine-rich repeat | 311..333 | CDD:275380 | 4/21 (19%) | ||
| LRR 12 | 335..358 | 7/22 (32%) | |||
| leucine-rich repeat | 336..359 | CDD:275378 | 7/22 (32%) | ||
| PCC | 341..>405 | CDD:188093 | 17/65 (26%) | ||
| leucine-rich repeat | 360..372 | CDD:275378 | 3/11 (27%) | ||
| Ig | 440..513 | CDD:472250 | 3/6 (50%) | ||
| Ig strand B | 440..444 | CDD:409353 | 1/3 (33%) | ||
| Ig strand C | 453..457 | CDD:409353 | |||
| Ig strand E | 479..483 | CDD:409353 | |||
| Ig strand F | 493..498 | CDD:409353 | |||
| Ig strand G | 506..509 | CDD:409353 | |||
| fn3 | 526..593 | CDD:394996 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||