DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and lrrc15

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001074151.1 Gene:lrrc15 / 791200 ZFINID:ZDB-GENE-031113-8 Length:564 Species:Danio rerio


Alignment Length:469 Identity:124/469 - (26%)
Similarity:205/469 - (43%) Gaps:66/469 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 WCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTI-DS 76
            |.::..:....|.. ::||..|||....:|  |....:..:|:.:.|:|..|||.:..|::: .|
Zfish     5 WFVIIGMCAMKAVA-SSCPESCQCQVTKIV--CQGFSVKEIPLPMPPTINALVISNTSIQSLKPS 66

  Fly    77 SIQFYAE-LTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGN 140
            ..|.:|| ||.....::::..:...||.....|..:..:...:..:.:..|..|:|:|.|.|.||
Zfish    67 DFQTFAETLTLFVAKNSNITEVEPHTFDQAFNLNALGFSGTMLTSLPDNLFQNLTALTTLTLSGN 131

  Fly   141 QISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSL 205
            ::..|.....|||..:.:|:|.:|.:..|...||.||.||.:|.|..|::..:.... ||.:..|
Zfish   132 KLEVLPSSLLTPLANVNKLDLSKNLLSSLSEDAFRGLDQLEMLMLQRNSIKQLHSST-FQGLSHL 195

  Fly   206 AELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPS-- 268
            ..|||..|.|..|.|..|.||..|..|.|:...:..:..:.|..:|.|:.|.||.|||..:||  
Zfish   196 RSLFLQQNQLTDIPAGLFDDLVNLEVLHLQDNKIEQLPANLFAKVQNLKKLYLSSNRLSLLPSGI 260

  Fly   269 ---------VGL------------------------------------SKLVRLEQLSLGQNDFE 288
                     :.|                                    |.|..:..|.:.:|..:
Zfish   261 FLSLPNLTHISLYDNRLSRLMPETFGTMALQELWLYDNLLTHLEENVFSNLTNIRLLVISRNRIQ 325

  Fly   289 VISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKH 353
            .||.|||.|||:||.:.:: ..||..:..|.|....||..:::.:|: :.::....|.|:|:|..
Zfish   326 YISPGAFNGLKELKEVSLH-TNRLTNIEPGIFRGLPNLANISIENNQ-IKQIPIQLLDGVSRLSL 388

  Fly   354 VVLKANALTSLAEGLFPWKDLQTLD------LSENPLSCDCRVMWLHNLLVAKNASQDDVSELLC 412
            :.::.|:|.:|     |...|.||.      |.|||..||..::.....|...:....::|.::|
Zfish   389 LEMQNNSLQNL-----PKDFLNTLSIVENVILHENPWRCDQDIIPFWGWLSQHSEKVKNLSLVMC 448

  Fly   413 EFPERLRGESLRHL 426
            ..|..|.|.::|.|
Zfish   449 SSPPPLNGRNVREL 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 5/18 (28%)
LRR 82..406 CDD:443914 99/377 (26%)
leucine-rich repeat 84..107 CDD:275380 4/22 (18%)
leucine-rich repeat 108..131 CDD:275380 3/22 (14%)
leucine-rich repeat 132..155 CDD:275380 9/22 (41%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..204 CDD:275380 6/23 (26%)
leucine-rich repeat 205..228 CDD:275380 11/22 (50%)
leucine-rich repeat 229..252 CDD:275380 4/22 (18%)
leucine-rich repeat 253..276 CDD:275380 12/69 (17%)
leucine-rich repeat 277..300 CDD:275380 9/22 (41%)
leucine-rich repeat 301..322 CDD:275380 6/20 (30%)
leucine-rich repeat 326..350 CDD:275380 4/23 (17%)
leucine-rich repeat 351..373 CDD:275380 5/21 (24%)
LRRCT 382..434 CDD:214507 12/45 (27%)
lrrc15NP_001074151.1 LRRNT 21..48 CDD:214470 8/28 (29%)
leucine-rich repeat 53..73 CDD:275380 6/19 (32%)
LRR 74..418 CDD:443914 91/351 (26%)
leucine-rich repeat 171..194 CDD:275380 6/23 (26%)
leucine-rich repeat 195..218 CDD:275380 11/22 (50%)
leucine-rich repeat 219..242 CDD:275380 4/22 (18%)
leucine-rich repeat 243..266 CDD:275380 9/22 (41%)
leucine-rich repeat 267..289 CDD:275380 1/21 (5%)
leucine-rich repeat 290..313 CDD:275380 2/22 (9%)
leucine-rich repeat 314..337 CDD:275380 9/22 (41%)
leucine-rich repeat 338..361 CDD:275380 6/23 (26%)
leucine-rich repeat 362..385 CDD:275380 4/23 (17%)
LRRCT 418..467 CDD:214507 12/45 (27%)

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