DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and Lrg1

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_084072.1 Gene:Lrg1 / 76905 MGIID:1924155 Length:342 Species:Mus musculus


Alignment Length:333 Identity:106/333 - (31%)
Similarity:156/333 - (46%) Gaps:37/333 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 IGQISNKTFIGLSAVTVL-NLRGNQISELHQGTFTPL--------LKIEELNLGENRIGYLDPKA 173
            :|::|:     |....:| :..|:.:| .|..|..|.        |.:|..||.:     |...|
Mouse    27 LGRVSS-----LKECLILQSAEGSTVS-CHGPTEFPSSLPADTVHLSVEFSNLTQ-----LPAAA 80

  Fly   174 FDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGAS 238
            ..|...||.|:|..|.|..: .|.:...:|.|..|.|..|.|:|:....|.....|:.|.|:...
Mouse    81 LQGCPGLRELHLSSNRLQAL-SPELLAPVPRLRALDLTRNALRSLPPGLFSTSANLSTLVLRENQ 144

  Fly   239 LRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKR 303
            ||.:|.....||..|..|||::|:|..:||..|:.|..|..|.||.|..|.:.||...|.::|:|
Mouse   145 LREVSAQWLQGLDALGHLDLAENQLSSLPSGLLASLGALHTLDLGYNLLESLPEGLLRGPRRLQR 209

  Fly   304 LEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGL 368
            |.:.|. ||:|:.....:....|..|.|:.|: |:.|..|:..||..|..:.|..|:|:|...||
Mouse   210 LHLEGN-RLQRLEDSLLAPQPFLRVLFLNDNQ-LVGVATGSFQGLQHLDMLDLSNNSLSSTPPGL 272

  Fly   369 F-----PWKDLQT-LDLSENPLSCDCRVMWLHNLLVA---KNASQDDVSELLCEFPERLRGESLR 424
            :     |.:|:|. .|:|.||..||..:..|...|||   |..||:|..   |..||.::|:.| 
Mouse   273 WAFLGRPTRDMQDGFDISHNPWICDKNLADLCRWLVANRNKMFSQNDTR---CAGPEAMKGQRL- 333

  Fly   425 HLNPAMMG 432
             |:.|.:|
Mouse   334 -LDVAELG 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380
LRR 82..406 CDD:443914 97/305 (32%)
leucine-rich repeat 84..107 CDD:275380
leucine-rich repeat 108..131 CDD:275380 3/12 (25%)
leucine-rich repeat 132..155 CDD:275380 6/31 (19%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..204 CDD:275380 7/23 (30%)
leucine-rich repeat 205..228 CDD:275380 7/22 (32%)
leucine-rich repeat 229..252 CDD:275380 8/22 (36%)
leucine-rich repeat 253..276 CDD:275380 10/22 (45%)
leucine-rich repeat 277..300 CDD:275380 9/22 (41%)
leucine-rich repeat 301..322 CDD:275380 7/20 (35%)
leucine-rich repeat 326..350 CDD:275380 9/23 (39%)
leucine-rich repeat 351..373 CDD:275380 8/26 (31%)
LRRCT 382..434 CDD:214507 20/54 (37%)
Lrg1NP_084072.1 leucine-rich repeat 65..86 CDD:275380 7/25 (28%)
LRR <66..>272 CDD:443914 70/213 (33%)
leucine-rich repeat 87..110 CDD:275380 7/23 (30%)
leucine-rich repeat 111..134 CDD:275380 7/22 (32%)
leucine-rich repeat 135..158 CDD:275380 8/22 (36%)
leucine-rich repeat 159..182 CDD:275380 10/22 (45%)
leucine-rich repeat 183..206 CDD:275380 9/22 (41%)
leucine-rich repeat 207..230 CDD:275380 7/23 (30%)
leucine-rich repeat 231..254 CDD:275380 9/23 (39%)
leucine-rich repeat 255..278 CDD:275380 7/22 (32%)
PCC 259..>341 CDD:188093 31/87 (36%)
Blue background indicates that the domain is not in the aligned region.

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