DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trn and Flrt3

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001165631.1 Gene:Flrt3 / 71436 MGIID:1918686 Length:649 Species:Mus musculus


Alignment Length:645 Identity:140/645 - (21%)
Similarity:234/645 - (36%) Gaps:176/645 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IWCILASIG----VEPAAGLA-NCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKI 71
            ::.|...||    |.|.:.:| :||..|:||..  .:.|.:..|..:|:.:......|.:::|:|
Mouse     8 LFLIGTKIGLFFQVAPLSVVAKSCPSVCRCDAG--FIYCNDRSLTSIPVGIPEDATTLYLQNNQI 70

  Fly    72 KT--IDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTV 134
            ..  |.|.::...::..:.|..|.|...|.....|.|   |:||..|.|..|   |:..||.:..
Mouse    71 NNVGIPSDLKNLLKVQRIYLYHNSLDEFPTNLPKYVK---ELHLQENNIRTI---TYDSLSKIPY 129

  Fly   135 LNLRGNQISELHQGTFTPLLKIEELNLGENRIG--YLDPKAFDGLSQLRILYLDDNALTTVPDPV 197
            |                     |||:|.:|.:.  .::..||...:.||:|:|..|.|:|:|.  
Mouse   130 L---------------------EELHLDDNSVSAVSIEEGAFRDSNYLRLLFLSRNHLSTIPG-- 171

  Fly   198 IFQAMP-SLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRN--ISHDSFLGLQELRILDLS 259
               .:| ::.||.|..|.:.:|.:.:...|..|.||.|.|..|.|  :....|..|..|..|.|.
Mouse   172 ---GLPRTIEELRLDDNRISTISSPSLHGLTSLKRLVLDGNLLNNHGLGDKVFFNLVNLTELSLV 233

  Fly   260 DNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNG 324
            .|.|...| |.|.. ..|.:|.|..|....:...||..|:||.||::                  
Mouse   234 RNSLTAAP-VNLPG-TSLRKLYLQDNHINRVPPNAFSYLRQLYRLDM------------------ 278

  Fly   325 NLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCR 389
                    ||..|..:.:|....|..:..::|:.|          ||             .|.|:
Mouse   279 --------SNNNLSNLPQGIFDDLDNITQLILRNN----------PW-------------YCGCK 312

  Fly   390 VM----WLHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVG 450
            :.    ||.:|.|..|     |..|:|:.||::||.:::.|:..:..|..:.          :|.
Mouse   313 MKWVRDWLQSLPVKVN-----VRGLMCQAPEKVRGMAIKDLSAELFDCKDSG----------IVS 362

  Fly   451 SAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYMSRHQHHPCSLGIHST 515
            :....||:....|..:         |.|......:.:.:..|...|:............:.:.|.
Mouse   363 TIQITTAIPNTAYPAQ---------GQWPAPVTKQPDIKNPKLIKDQRTTGSPSRKTILITVKSV 418

  Fly   516 FPNT----------YTA--------PHHP-----------GATHHYGMCPMPVNDLGAIDPQQKF 551
            .|:|          .||        .|.|           |....|.:.        |::|:..:
Mouse   419 TPDTIHISWRLALPMTALRLSWLKLGHSPAFGSITETIVTGERSEYLVT--------ALEPESPY 475

  Fly   552 QQLVVPTATMISEKKLNNNKALVSQGAI---DDSASFVLHMKSATMGRDVHQQ---NPQL 605
            :..:||..|        :|..|..:..:   ..:|...::..:.|:.|:..::   ||.|
Mouse   476 RVCMVPMET--------SNLYLFDETPVCIETQTAPLRMYNPTTTLNREQEKEPYKNPNL 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 5/19 (26%)
LRR_8 83..142 CDD:290566 16/58 (28%)
leucine-rich repeat 84..107 CDD:275380 5/22 (23%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
LRR_RI 129..421 CDD:238064 75/300 (25%)
LRR_8 132..190 CDD:290566 13/59 (22%)
leucine-rich repeat 132..155 CDD:275380 1/22 (5%)
leucine-rich repeat 156..179 CDD:275380 7/24 (29%)
leucine-rich repeat 180..204 CDD:275380 9/24 (38%)
LRR_8 203..263 CDD:290566 20/62 (32%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 9/24 (38%)
LRR_8 252..308 CDD:290566 19/55 (35%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 7/22 (32%)
leucine-rich repeat 301..322 CDD:275380 3/20 (15%)
LRR_8 325..384 CDD:290566 9/58 (16%)
leucine-rich repeat 326..350 CDD:275380 5/23 (22%)
leucine-rich repeat 351..373 CDD:275380 4/21 (19%)
Flrt3NP_001165631.1 LRRNT 31..61 CDD:214470 8/31 (26%)
Interaction with ADGRL3. /evidence=ECO:0000250|UniProtKB:Q9NZU0 38..67 5/30 (17%)
LRR 1. /evidence=ECO:0000255 58..82 5/23 (22%)
LRR_4 61..100 CDD:289563 8/38 (21%)
leucine-rich repeat 61..84 CDD:275378 5/22 (23%)
LRR 2. /evidence=ECO:0000255 83..105 4/21 (19%)
leucine-rich repeat 85..104 CDD:275380 4/18 (22%)
LRR_8 106..166 CDD:290566 23/86 (27%)
leucine-rich repeat 106..129 CDD:275380 10/28 (36%)
LRR_RI 107..327 CDD:238064 76/302 (25%)
LRR 3. /evidence=ECO:0000255 107..126 9/24 (38%)
LRR 4. /evidence=ECO:0000255 127..152 8/45 (18%)
leucine-rich repeat 130..155 CDD:275380 8/45 (18%)
LRR 5. /evidence=ECO:0000255 153..176 9/27 (33%)
leucine-rich repeat 156..176 CDD:275380 9/24 (38%)
LRR_8 175..237 CDD:290566 19/61 (31%)
leucine-rich repeat 177..200 CDD:275380 6/22 (27%)
LRR 6. /evidence=ECO:0000255 178..197 5/18 (28%)
LRR 7. /evidence=ECO:0000255 198..223 9/24 (38%)
leucine-rich repeat 201..226 CDD:275380 9/24 (38%)
LRR 8. /evidence=ECO:0000255 224..246 9/22 (41%)
leucine-rich repeat 227..248 CDD:275380 8/22 (36%)
LRR_8 247..306 CDD:290566 18/94 (19%)
LRR 9. /evidence=ECO:0000255 247..269 6/21 (29%)
leucine-rich repeat 249..272 CDD:275380 7/22 (32%)
LRR 10. /evidence=ECO:0000255 270..293 9/48 (19%)
leucine-rich repeat 273..296 CDD:275380 8/48 (17%)
LRRCT 305..356 CDD:214507 18/78 (23%)
fn3 413..478 CDD:278470 11/72 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 629..649
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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