Sequence 1: | NP_001261796.1 | Gene: | trn / 39491 | FlyBaseID: | FBgn0010452 | Length: | 751 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001102939.1 | Gene: | Lrrtm2 / 685472 | RGDID: | 1593785 | Length: | 515 | Species: | Rattus norvegicus |
Alignment Length: | 632 | Identity: | 145/632 - (22%) |
---|---|---|---|
Similarity: | 222/632 - (35%) | Gaps: | 213/632 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 MMIAFVGIWCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSN 69
Fly 70 KIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTV 134
Fly 135 LNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIF 199
Fly 200 QAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLD 264
Fly 265 RIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYL 329
Fly 330 NLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCRV---- 390
Fly 391 --------MWLHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGAL 447
Fly 448 LVGSAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYMSRHQHH------ 506
Fly 507 PCSLGIHSTFPNTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQKFQQLVVPTATM---------- 561
Fly 562 ----ISEK-------------KLNNNKALVSQGAIDDSASFVLHMKS 591 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trn | NP_001261796.1 | leucine-rich repeat | 62..80 | CDD:275380 | 2/17 (12%) |
LRR_8 | 83..142 | CDD:290566 | 18/58 (31%) | ||
leucine-rich repeat | 84..107 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 108..131 | CDD:275380 | 9/22 (41%) | ||
LRR_RI | 129..421 | CDD:238064 | 75/303 (25%) | ||
LRR_8 | 132..190 | CDD:290566 | 21/57 (37%) | ||
leucine-rich repeat | 132..155 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 156..179 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 180..204 | CDD:275380 | 7/23 (30%) | ||
LRR_8 | 203..263 | CDD:290566 | 15/59 (25%) | ||
leucine-rich repeat | 205..228 | CDD:275380 | 2/22 (9%) | ||
leucine-rich repeat | 229..252 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 252..308 | CDD:290566 | 15/55 (27%) | ||
leucine-rich repeat | 253..276 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 277..300 | CDD:275380 | 5/22 (23%) | ||
leucine-rich repeat | 301..322 | CDD:275380 | 5/20 (25%) | ||
LRR_8 | 325..384 | CDD:290566 | 14/58 (24%) | ||
leucine-rich repeat | 326..350 | CDD:275380 | 4/23 (17%) | ||
leucine-rich repeat | 351..373 | CDD:275380 | 4/21 (19%) | ||
Lrrtm2 | NP_001102939.1 | LRR 1 | 61..83 | 6/28 (21%) | |
leucine-rich repeat | 66..86 | CDD:275380 | 6/19 (32%) | ||
LRR_RI | 73..311 | CDD:238064 | 76/287 (26%) | ||
LRR 2 | 84..107 | 7/22 (32%) | |||
LRR_8 | 85..145 | CDD:290566 | 21/59 (36%) | ||
leucine-rich repeat | 87..110 | CDD:275380 | 9/22 (41%) | ||
LRR 3 | 109..131 | 7/21 (33%) | |||
leucine-rich repeat | 111..134 | CDD:275380 | 9/22 (41%) | ||
LRR 4 | 132..155 | 7/22 (32%) | |||
LRR_8 | 134..193 | CDD:290566 | 20/83 (24%) | ||
leucine-rich repeat | 135..158 | CDD:275380 | 8/22 (36%) | ||
LRR 5 | 156..179 | 9/47 (19%) | |||
leucine-rich repeat | 159..182 | CDD:275380 | 9/47 (19%) | ||
LRR_8 | 181..241 | CDD:290566 | 20/59 (34%) | ||
LRR 6 | 181..203 | 6/21 (29%) | |||
leucine-rich repeat | 183..206 | CDD:275380 | 8/22 (36%) | ||
LRR 7 | 205..227 | 7/21 (33%) | |||
leucine-rich repeat | 207..230 | CDD:275380 | 8/22 (36%) | ||
LRR 8 | 229..251 | 5/21 (24%) | |||
leucine-rich repeat | 231..254 | CDD:275380 | 5/22 (23%) | ||
LRR 9 | 252..275 | 5/23 (22%) | |||
LRR_8 | 253..312 | CDD:290566 | 18/83 (22%) | ||
leucine-rich repeat | 255..278 | CDD:275380 | 5/23 (22%) | ||
LRR 10 | 276..299 | 7/39 (18%) | |||
leucine-rich repeat | 279..300 | CDD:275380 | 6/37 (16%) | ||
Involved in DLG4-binding | 512..515 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |