DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and LOC5666885

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_001687923.2 Gene:LOC5666885 / 5666885 VectorBaseID:AGAMI1_008889 Length:477 Species:Anopheles gambiae


Alignment Length:294 Identity:70/294 - (23%)
Similarity:133/294 - (45%) Gaps:37/294 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 AAGLANCPPGCQCDDNTLVVQCGEGQLDVL-------PIALNPSIQRLVIKSNKIKTIDSSIQFY 81
            |.||..|..|       :|....:.:::::       |.....::.:|...::|:|.:|     .
Mosquito    10 ALGLLACYAG-------VVFAASQSEVEIVYKCATAGPKTCFLNVVKLEDANHKLKLVD-----I 62

  Fly    82 AELTFLDLSSNHLMTI-PQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISEL 145
            .:.|.|::....::.: ||...:...||::|     .||::..|......:...::...|:|..|
Mosquito    63 EDKTILNIKGGSIVALQPQHCSSVFAKLEKV-----SIGRVGLKELCFAPSFVYVSAEHNRIRTL 122

  Fly   146 HQGTFTP-LLKIEELNLGENRIGYLDP-KAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAEL 208
            |.....| ..::|.|.|.:|::..::. :||..|.:   |:|:.|.|:|: |...|..||.|.:|
Mosquito   123 HVPEVAPGAYRVEVLRLNDNQLESVESMRAFVALKE---LHLERNTLSTL-DMACFAEMPKLEKL 183

  Fly   209 FLGMNTLQSIQADAFQ-DLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPSVGLS 272
            :|..|.|..|.:...: .|..|:.|.|:..:|......:: .|..|.:|:||.|.|.::.  ||.
Mosquito   184 YLAYNRLNVIASTVSELSLPALSVLALQNNTLTVFDLRTW-SLPNLELLELSANNLTKVS--GLD 245

  Fly   273 KLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEV 306
            .:..|..:||..|.::.......  |:||::.:|
Mosquito   246 NVQALSDISLAGNRWQCHELDQM--LEQLEKNDV 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 4/17 (24%)
LRR 82..406 CDD:443914 59/229 (26%)
leucine-rich repeat 84..107 CDD:275380 4/23 (17%)
leucine-rich repeat 108..131 CDD:275380 5/22 (23%)
leucine-rich repeat 132..155 CDD:275380 5/23 (22%)
leucine-rich repeat 156..179 CDD:275380 7/23 (30%)
leucine-rich repeat 180..204 CDD:275380 8/23 (35%)
leucine-rich repeat 205..228 CDD:275380 7/23 (30%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
leucine-rich repeat 301..322 CDD:275380 2/6 (33%)
leucine-rich repeat 326..350 CDD:275380
leucine-rich repeat 351..373 CDD:275380
LRRCT 382..434 CDD:214507
LOC5666885XP_001687923.2 None
Blue background indicates that the domain is not in the aligned region.

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