DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trn and lgr4

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001340791.1 Gene:lgr4 / 558825 ZFINID:ZDB-GENE-111013-1 Length:971 Species:Danio rerio


Alignment Length:680 Identity:162/680 - (23%)
Similarity:250/680 - (36%) Gaps:214/680 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GVEPAAG-----LANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSIQ 79
            |...|||     .|.|.|.|:||::......|.| |..:|..|                  |:..
Zfish    17 GQAAAAGEGQSTPATCSPLCRCDEDGGADCSGRG-LTSVPTGL------------------SAFT 62

  Fly    80 FYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISE 144
            :|     ||:|.|::..:|...|.....|:|:.|..|.:..|..:...||..:.||.|:.||:..
Zfish    63 YY-----LDISMNNITELPANVFRNLPYLEELRLAGNDLAFIHPEALSGLHQLKVLMLQNNQLKT 122

  Fly   145 LHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVP-DPVIFQAMPSLAEL 208
            :.......|..::.|.|..|.|..:...:|:||.|||.|:||||:||.|| .|:  |...:|..|
Zfish   123 VPSAALKNLNALQSLRLDANHITSVPEDSFEGLQQLRHLWLDDNSLTEVPISPL--QHQSNLQAL 185

  Fly   209 FLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSK 273
            .|.:|.:..|..:||.:|..|..|.|....::.|..:.|.||..|..|||:.|.|...|. .:..
Zfish   186 TLALNRITHIPDNAFANLSSLVVLHLHNNRIQEIGKNCFNGLDNLETLDLNFNNLKIFPE-AIQM 249

  Fly   274 LVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALR--------LKRVMTGAFSDNGNLEYLN 330
            |.:|::|....|:...|.||||..         |..||        |..|.|.||.:..:|..|.
Zfish   250 LPKLKELGFHSNNIASIPEGAFCR---------NSLLRTIHLFDNPLSFVGTTAFQNLSDLHSLM 305

  Fly   331 LSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKD---LQTLDLSENPLSCDCRVMW 392
            |....|:.:..  :|:|...|:.:.|....:.|:...|  .:|   |:|:|||.|          
Zfish   306 LRGASMMQDFP--SLTGTINLESLTLTGTKIRSIPADL--CEDLTVLRTVDLSYN---------- 356

  Fly   393 LHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVGSAATITA 457
                         |:.:|                 |:..||.    |.|.:              
Zfish   357 -------------DIEDL-----------------PSFQGCV----RLQDI-------------- 373

  Fly   458 LALVLYRCRH-KIRETIKGGLWGNSALGRKEREYQKTFCDEDYMSRHQ----HHPCSLGIHSTFP 517
                  ..:| :|::..:|...|.::|...:            :||:|    |....|.: |...
Zfish   374 ------NLQHNQIKQIDRGTFQGMTSLRVLD------------LSRNQIKFIHRDAFLSL-SALT 419

  Fly   518 NTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQKFQQLVVPTA--TMISEKKLNNNKALVSQGAID 580
            |                ..:.:|.|.:           ||||  :.:::.||..|          
Zfish   420 N----------------LDLSLNSLAS-----------VPTAGLSALNQLKLTGN---------- 447

  Fly   581 DSASFVLHMKSATMGRDVHQQNPQLNHYTKPQFLSATATVG-DSCYSYAD--------------- 629
                  :.:::..|.:.:    |:|...|.|......|.|. ||..:.|:               
Zfish   448 ------MELRNGLMSKTL----PKLRSITVPYAYQCCAFVAYDSAVNPAEDDERRNAFGGEEDME 502

  Fly   630 -VPMV-HGAPLGGPNQP--------QLRLT 649
             :||| |.:||.|..:|        .:|||
Zfish   503 RIPMVMHCSPLPGAFKPCEHLLGSWMIRLT 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 1/17 (6%)
LRR_8 83..142 CDD:290566 17/58 (29%)
leucine-rich repeat 84..107 CDD:275380 6/22 (27%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
LRR_RI 129..421 CDD:238064 86/303 (28%)
LRR_8 132..190 CDD:290566 21/57 (37%)
leucine-rich repeat 132..155 CDD:275380 6/22 (27%)
leucine-rich repeat 156..179 CDD:275380 7/22 (32%)
leucine-rich repeat 180..204 CDD:275380 13/24 (54%)
LRR_8 203..263 CDD:290566 20/59 (34%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..308 CDD:290566 16/55 (29%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 8/22 (36%)
leucine-rich repeat 301..322 CDD:275380 8/28 (29%)
LRR_8 325..384 CDD:290566 17/61 (28%)
leucine-rich repeat 326..350 CDD:275380 6/23 (26%)
leucine-rich repeat 351..373 CDD:275380 4/21 (19%)
lgr4NP_001340791.1 LRR 1 58..82 9/46 (20%)
leucine-rich repeat 64..85 CDD:275380 7/25 (28%)
LRR_8 84..144 CDD:316378 16/59 (27%)
LRR 2 84..106 5/21 (24%)
leucine-rich repeat 86..109 CDD:275380 7/22 (32%)
LRR 3 107..130 6/22 (27%)
leucine-rich repeat 110..133 CDD:275380 6/22 (27%)
LRR 4 131..154 6/22 (27%)
leucine-rich repeat 134..157 CDD:275380 7/22 (32%)
LRR 137..>452 CDD:227223 105/450 (23%)
LRR 5 156..178 13/23 (57%)
leucine-rich repeat 158..181 CDD:275380 13/24 (54%)
LRR 6 179..202 7/22 (32%)
leucine-rich repeat 182..205 CDD:275380 8/22 (36%)
LRR 7 204..226 5/21 (24%)
leucine-rich repeat 206..229 CDD:275380 7/22 (32%)
LRR 8 227..250 8/23 (35%)
leucine-rich repeat 230..252 CDD:275380 8/22 (36%)
LRR_8 251..308 CDD:316378 19/65 (29%)
LRR 9 251..273 8/21 (38%)
leucine-rich repeat 253..276 CDD:275380 9/31 (29%)
LRR 10 275..297 7/21 (33%)
leucine-rich repeat 277..298 CDD:275380 7/20 (35%)
LRR 11 299..321 5/23 (22%)
LRR 12 322..344 4/23 (17%)
LRR 13 345..366 9/60 (15%)
leucine-rich repeat 348..369 CDD:275380 11/64 (17%)
LRR 14 367..390 6/46 (13%)
leucine-rich repeat 370..393 CDD:275380 5/42 (12%)
LRR 15 391..414 5/34 (15%)
leucine-rich repeat 394..415 CDD:275380 6/32 (19%)
LRR 16 416..438 8/48 (17%)
leucine-rich repeat 418..438 CDD:275380 7/46 (15%)
7tmA_LGR4 527..811 CDD:320483 3/6 (50%)
TM helix 1 528..554 CDD:320483 3/5 (60%)
TM helix 2 562..587 CDD:320483
TM helix 3 607..637 CDD:320483
TM helix 4 649..679 CDD:320483
TM helix 5 698..727 CDD:320483
TM helix 6 736..766 CDD:320483
TM helix 7 779..804 CDD:320483
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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