Sequence 1: | NP_001261796.1 | Gene: | trn / 39491 | FlyBaseID: | FBgn0010452 | Length: | 751 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001340791.1 | Gene: | lgr4 / 558825 | ZFINID: | ZDB-GENE-111013-1 | Length: | 971 | Species: | Danio rerio |
Alignment Length: | 680 | Identity: | 162/680 - (23%) |
---|---|---|---|
Similarity: | 250/680 - (36%) | Gaps: | 214/680 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 20 GVEPAAG-----LANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSIQ 79
Fly 80 FYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISE 144
Fly 145 LHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVP-DPVIFQAMPSLAEL 208
Fly 209 FLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSK 273
Fly 274 LVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALR--------LKRVMTGAFSDNGNLEYLN 330
Fly 331 LSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKD---LQTLDLSENPLSCDCRVMW 392
Fly 393 LHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVGSAATITA 457
Fly 458 LALVLYRCRH-KIRETIKGGLWGNSALGRKEREYQKTFCDEDYMSRHQ----HHPCSLGIHSTFP 517
Fly 518 NTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQKFQQLVVPTA--TMISEKKLNNNKALVSQGAID 580
Fly 581 DSASFVLHMKSATMGRDVHQQNPQLNHYTKPQFLSATATVG-DSCYSYAD--------------- 629
Fly 630 -VPMV-HGAPLGGPNQP--------QLRLT 649 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trn | NP_001261796.1 | leucine-rich repeat | 62..80 | CDD:275380 | 1/17 (6%) |
LRR_8 | 83..142 | CDD:290566 | 17/58 (29%) | ||
leucine-rich repeat | 84..107 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 108..131 | CDD:275380 | 7/22 (32%) | ||
LRR_RI | 129..421 | CDD:238064 | 86/303 (28%) | ||
LRR_8 | 132..190 | CDD:290566 | 21/57 (37%) | ||
leucine-rich repeat | 132..155 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 156..179 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 180..204 | CDD:275380 | 13/24 (54%) | ||
LRR_8 | 203..263 | CDD:290566 | 20/59 (34%) | ||
leucine-rich repeat | 205..228 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 229..252 | CDD:275380 | 7/22 (32%) | ||
LRR_8 | 252..308 | CDD:290566 | 16/55 (29%) | ||
leucine-rich repeat | 253..276 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 277..300 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 301..322 | CDD:275380 | 8/28 (29%) | ||
LRR_8 | 325..384 | CDD:290566 | 17/61 (28%) | ||
leucine-rich repeat | 326..350 | CDD:275380 | 6/23 (26%) | ||
leucine-rich repeat | 351..373 | CDD:275380 | 4/21 (19%) | ||
lgr4 | NP_001340791.1 | LRR 1 | 58..82 | 9/46 (20%) | |
leucine-rich repeat | 64..85 | CDD:275380 | 7/25 (28%) | ||
LRR_8 | 84..144 | CDD:316378 | 16/59 (27%) | ||
LRR 2 | 84..106 | 5/21 (24%) | |||
leucine-rich repeat | 86..109 | CDD:275380 | 7/22 (32%) | ||
LRR 3 | 107..130 | 6/22 (27%) | |||
leucine-rich repeat | 110..133 | CDD:275380 | 6/22 (27%) | ||
LRR 4 | 131..154 | 6/22 (27%) | |||
leucine-rich repeat | 134..157 | CDD:275380 | 7/22 (32%) | ||
LRR | 137..>452 | CDD:227223 | 105/450 (23%) | ||
LRR 5 | 156..178 | 13/23 (57%) | |||
leucine-rich repeat | 158..181 | CDD:275380 | 13/24 (54%) | ||
LRR 6 | 179..202 | 7/22 (32%) | |||
leucine-rich repeat | 182..205 | CDD:275380 | 8/22 (36%) | ||
LRR 7 | 204..226 | 5/21 (24%) | |||
leucine-rich repeat | 206..229 | CDD:275380 | 7/22 (32%) | ||
LRR 8 | 227..250 | 8/23 (35%) | |||
leucine-rich repeat | 230..252 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 251..308 | CDD:316378 | 19/65 (29%) | ||
LRR 9 | 251..273 | 8/21 (38%) | |||
leucine-rich repeat | 253..276 | CDD:275380 | 9/31 (29%) | ||
LRR 10 | 275..297 | 7/21 (33%) | |||
leucine-rich repeat | 277..298 | CDD:275380 | 7/20 (35%) | ||
LRR 11 | 299..321 | 5/23 (22%) | |||
LRR 12 | 322..344 | 4/23 (17%) | |||
LRR 13 | 345..366 | 9/60 (15%) | |||
leucine-rich repeat | 348..369 | CDD:275380 | 11/64 (17%) | ||
LRR 14 | 367..390 | 6/46 (13%) | |||
leucine-rich repeat | 370..393 | CDD:275380 | 5/42 (12%) | ||
LRR 15 | 391..414 | 5/34 (15%) | |||
leucine-rich repeat | 394..415 | CDD:275380 | 6/32 (19%) | ||
LRR 16 | 416..438 | 8/48 (17%) | |||
leucine-rich repeat | 418..438 | CDD:275380 | 7/46 (15%) | ||
7tmA_LGR4 | 527..811 | CDD:320483 | 3/6 (50%) | ||
TM helix 1 | 528..554 | CDD:320483 | 3/5 (60%) | ||
TM helix 2 | 562..587 | CDD:320483 | |||
TM helix 3 | 607..637 | CDD:320483 | |||
TM helix 4 | 649..679 | CDD:320483 | |||
TM helix 5 | 698..727 | CDD:320483 | |||
TM helix 6 | 736..766 | CDD:320483 | |||
TM helix 7 | 779..804 | CDD:320483 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24373 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |