DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trn and kek6

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001263151.1 Gene:kek6 / 43729 FlyBaseID:FBgn0039862 Length:843 Species:Drosophila melanogaster


Alignment Length:858 Identity:163/858 - (18%)
Similarity:287/858 - (33%) Gaps:243/858 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 WCILASIGVEPAAGLA-NCPPGCQC--DDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTI 74
            |.:|..:....|...: :|...|.|  .:......|...||..:|..|:..:|.||:..|.|..:
  Fly    20 WILLCLVAWTVADDWSLSCASNCTCKWTNGKKSAICSSLQLTTIPNTLSTELQVLVLNDNHIPYL 84

  Fly    75 DSSIQFYAELTFLD-----LSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTV 134
            :.  :.::.|..|:     |..:.:..|.:.:|...|.|.|:.|:.||:..:...||:|...:.:
  Fly    85 NR--EEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKDTFMGNDRLRI 147

  Fly   135 LNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIF 199
            |.|.||.:..|....|..|..:..|::.:..|.|:||.:...|:.|..|.|.:|.|.::.: .:|
  Fly   148 LYLNGNPLKRLAAYQFPILPHLRTLDMHDCLISYIDPMSLANLNLLEFLNLKNNLLESLSE-YVF 211

  Fly   200 QAMPSLAELFLGMNTLQ-SIQADAFQDLKGLTRLE-----LKGASLRNISHDSFLGLQELRILDL 258
            |.|.:|..|.|..|..| :.:...|:.....:||.     .||..           .|:.|..|.
  Fly   212 QHMANLKTLSLEENPWQCNCKLRKFRGWYVNSRLSSVSLVCKGPP-----------AQKDRTWDS 265

  Fly   259 SDNRLDRI-PSVGLSKLVRLEQLSLGQNDF-------EVISEGAFMGLKQLKRLEVNGALRLKRV 315
            .|:.|... |.|.:.....::.:.:|.|..       :.:.|.|:         |:||.:     
  Fly   266 VDDELFGCPPRVEIFNNEEVQNIDIGSNTTFSCLVYGDPLPEVAW---------ELNGKI----- 316

  Fly   316 MTGAFSDNGNL--EYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLD 378
                 .||.|:  |..:::|:|:...:....::.|....:....:|::.|:.:.:    .:...:
  Fly   317 -----LDNDNVLFESESIASDKLWSNLTVFNVTSLDAGTYACTGSNSIGSMTQNI----SIYLSE 372

  Fly   379 LSENPLSCDCRVMWLHNLLVAKNAS---QDDVSELLCEFPERLRGESLRHLNPA--MMGCTHADP 438
            :.::.|.......|...|::....:   ...:|.::|......|..  ||.|.|  ....:..|.
  Fly   373 IVQHVLEKTPETFWYFGLIMGIFGTVFLLISISFVVCLCKRTTRQH--RHANKAGVKSSVSFNDQ 435

  Fly   439 RKQALIGALLVGSAATITALALVLYRCRHKIRETIKGGLWG--------------NSALGRKERE 489
            .|:      |:.|:.|.|.              ..:|..:|              ::.:|..:.|
  Fly   436 EKK------LLDSSVTTTT--------------NDRGDSYGIDNQPTSIGMNKGDSAGMGFNQIE 480

  Fly   490 YQKTFCDEDYMSRHQHH------------------------------------PCSLGIHSTFPN 518
            ...       :..|:|.                                    |.|:..|     
  Fly   481 IHA-------VESHRHGSMLVQQQPQQQQVAGGGGMRQQLMQVKDSTCGMMSVPTSMAGH----- 533

  Fly   519 TYTAPHHPGATHHYGMCPMPVNDLGAIDPQQKFQQLVVP--------------TATMISEKKLNN 569
               |..||.....    ..|:| :|...|..:|...:||              |..|:....||.
  Fly   534 ---AHSHPAQISE----EFPLN-VGVFPPPPEFCSNIVPNPAFGGNIFIRVSVTQDMLDGADLNM 590

  Fly   570 NKALVS----------QG----AIDDSASFVLHMKSATMG---RDVHQQNPQLNHYTKPQFLSAT 617
            ...|::          .|    |:.:.....|...:|..|   :|...|..|..|..:.|...  
  Fly   591 YPDLLNIPKRMQDVQESGAGAVAVPEGQFATLPRHTARRGILKKDTSLQQQQQQHQQQHQHQQ-- 653

  Fly   618 ATVGDSCYSYADVPMVHGAPLGGPNQPQLRLTQEHFKQRELYDQEMG----SEILDHNY------ 672
                                    .|.|.::.|:..:|.:...|..|    .||:.:|.      
  Fly   654 ------------------------QQQQQQIQQQQHQQLQQQHQPSGLYTHDEIVTYNLEASGYD 694

  Fly   673 IYSNTHYSMPLEQLGRSKTPTPPPMPPAL--------PLRNGLCATTGRRSFQQKSASQKQQQNN 729
            .:.:.::|..:|      .|.||| |||:        |..|. ||:....:....||.|......
  Fly   695 PHQSGYHSNAME------LPPPPP-PPAVTAVVQCHHPSPNN-CASCINNAPPPPSACQSPPVEV 751

  Fly   730 NTLRQFTHXSSTY 742
            ..:|..   ||.|
  Fly   752 TPMRPL--DSSAY 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 5/17 (29%)
LRR 82..406 CDD:443914 71/347 (20%)
leucine-rich repeat 84..107 CDD:275380 5/27 (19%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 7/22 (32%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..204 CDD:275380 8/23 (35%)
leucine-rich repeat 205..228 CDD:275380 6/23 (26%)
leucine-rich repeat 229..252 CDD:275380 4/27 (15%)
leucine-rich repeat 253..276 CDD:275380 6/23 (26%)
leucine-rich repeat 277..300 CDD:275380 4/29 (14%)
leucine-rich repeat 301..322 CDD:275380 3/20 (15%)
leucine-rich repeat 326..350 CDD:275380 4/25 (16%)
leucine-rich repeat 351..373 CDD:275380 2/21 (10%)
LRRCT 382..434 CDD:214507 10/56 (18%)
kek6NP_001263151.1 LRR <56..>226 CDD:443914 47/172 (27%)
leucine-rich repeat 71..96 CDD:275380 6/26 (23%)
LRR_8 96..155 CDD:404697 16/58 (28%)
leucine-rich repeat 97..120 CDD:275380 3/22 (14%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
leucine-rich repeat 145..168 CDD:275380 7/22 (32%)
leucine-rich repeat 169..216 CDD:275380 14/47 (30%)
LRRCT 225..274 CDD:214507 12/59 (20%)
Ig 286..360 CDD:472250 15/92 (16%)
Ig strand B 294..298 CDD:409353 0/3 (0%)
Ig strand C 307..310 CDD:409353 1/2 (50%)
Ig strand E 336..340 CDD:409353 0/3 (0%)
Ig strand F 350..355 CDD:409353 0/4 (0%)

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