back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment trn and chp

DIOPT Version :9

Sequence 1:	NP_001261796.1	Gene:	trn / 39491	FlyBaseID:	FBgn0010452	Length:	751	Species:	Drosophila melanogaster
Sequence 2:	NP_001263137.1	Gene:	chp / 43690	FlyBaseID:	FBgn0267435	Length:	1338	Species:	Drosophila melanogaster

Alignment Length:	662	Identity:	139/662 - (20%)
Similarity:	231/662 - (34%)	Gaps:	206/662 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    54 PIALNPSIQRLVIKSNKIKTI-DSSIQFYAELTFLDLSS-------------------------- 91
            |:....|:|.|...:|.|.:: |:|..|...|..|:|..
  Fly   518 PLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRF 582

  Fly    92 NHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKI 156
            |||.:|.|.||...:.|:::||:.|||.:|..:.|:.|..:..|:||||:|:.|...:|..|.|:
  Fly   583 NHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKL 647

  Fly   157 EELNLGENRIGYLDPKAFDGL-----------------------------------SQLRILYLD 186
            |.|::..|::...:...||.:                                   |.::||.|.
  Fly   648 EILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLS 712

  Fly   187 DNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQ 251
            .|.::.:.......|..||..|.||.|:|.:...|.|.::..|..|:|....:..:..|:|...:
  Fly   713 HNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTK 777

  Fly   252 ELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVM 316
            :|:::....|.|..||......:..|..:....|....:.:..|.
  Fly   778 QLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFY-------------------- 822

  Fly   317 TGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLS---------------------------QLKHV 354
                  ||.:|.|::|.| |:|::...:||.|:                           .|:::
  Fly   823 ------NGGMEKLDVSHN-MMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYL 880

  Fly   355 VLKANALTSLAEGLF-PWKDLQTLDLSENPLSCDCRV-----MWLHNLLV---AKNASQDDVSEL 410
            .:..|.|..:.:.:| ....|..||||.|.   |.:|     |.|.|.|:   .:|.|...|.|:
  Fly   881 DISYNYLLRIDDAVFATMPKLAVLDLSHNR---DLKVMDKSFMGLENSLIKLGLENISLSTVPEI 942

  Fly   411 LCEFPERLR---------GESLRH--LNPAMMGCTHADPRKQALIGALLVGSAATITALALVLYR 464
            ..::....|         .:.|.|  .|..|:..::.|                 :|.:.|:...
  Fly   943 RLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNND-----------------LTNVPLMTQA 990

  Fly   465 CRHKIRETIKG----GLWGNSALGRKEREYQKTFCDEDY----MSRHQHHPCSLGIHSTFPNT-- 519
            ..|..|..:.|    .|..||..|          .:||.    :|..:.|....|...:.|:.
  Fly   991 LPHLRRLMLSGNPITSLNNNSFDG----------VNEDLEMLDISNFRLHYFEYGCLDSLPHLRS 1045

  Fly   520 -----------YTAPHHPGATHHYGM------CPMPVNDL---GAIDPQQKFQQLVVPTATMISE 564
                       :..||.  ..|||.:      .|.|...:   |: .|.|:.|.|.:...|.:..
  Fly  1046 LKLTAYSHLEHFNIPHL--LRHHYNIRQLWIEAPQPFTRIVKKGS-GPTQEMQTLQLGNPTDLQR 1107

  Fly   565 K-------KLNN 569
            :       ||.|
  Fly  1108 EMEGHLPSKLTN 1119

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.