DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and 2mit

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster


Alignment Length:476 Identity:115/476 - (24%)
Similarity:191/476 - (40%) Gaps:83/476 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IAFVGIWCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQL---DVLPIALNPSIQRLVIKS 68
            :|.:..|..|..:.|  ||.|.:.|     ..:.|..:..|.||   ||..::.. ||.|::...
  Fly    13 LALLLAWTWLTRLVV--AAHLVDIP-----TSSRLAAEREEQQLSRQDVGRLSYQ-SIHRMLRDE 69

  Fly    69 NKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVT 133
            |:..:....:::..:....:|..|          |...||...|.:.........:.......:|
  Fly    70 NEPDSFRGELRYQQKRHKRELELN----------APANKLNLTHRDLRTFNSTGGQWKGDFQVIT 124

  Fly   134 VLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLD--DNALTTVPDP 196
            .::|..||:..|....|.   ::.:|:||.|.:..:.....|....|..:.||  .|..:.:...
  Fly   125 AMDLSSNQLESLSLDNFN---QLRQLDLGNNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTS 186

  Fly   197 VIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDN 261
            ...|.:|.|..|.|..|.|.:|..::|.:|..|..|.|...::.:|.:::||.|..|:.||||.|
  Fly   187 FFAQRLPQLKNLNLAHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSHN 251

  Fly   262 RLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNG-------ALRLKRVMTGA 319
            ||.......|..:..|..||:..|....::...|:....||.|:.:|       |...:.|.|..
  Fly   252 RLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTGLCQVPAALAQSVRTLK 316

  Fly   320 FSDN-------GN------LEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFP- 370
            .|||       |:      |:||:||.:: :.:|::.||..|..|:.:.|..|.|..:...|.| 
  Fly   317 LSDNWLKAINCGDMDSYPLLQYLDLSHSR-IAQVEDDALGRLELLESLFLDRNLLMRVPSSLPPS 380

  Fly   371 ---------------------WKDLQTLDLSENPLSCDCRVMWLHNLLVAK-------NASQDDV 407
                                 ..:|||||||.|      |:::|..|.:.|       ::..:.|
  Fly   381 LEHLFLQHNQIMELPPQAFVGLVNLQTLDLSNN------RLIFLPPLSLPKLLTLNLESSGVESV 439

  Fly   408 SELLCEFPERLRGESLRHLNP 428
            |:.:.....:|| :.|...||
  Fly   440 SQSIVHTLPQLR-DLLLEDNP 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 2/17 (12%)
LRR 82..406 CDD:443914 90/374 (24%)
leucine-rich repeat 84..107 CDD:275380 3/22 (14%)
leucine-rich repeat 108..131 CDD:275380 2/22 (9%)
leucine-rich repeat 132..155 CDD:275380 6/22 (27%)
leucine-rich repeat 156..179 CDD:275380 5/22 (23%)
leucine-rich repeat 180..204 CDD:275380 5/25 (20%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
leucine-rich repeat 253..276 CDD:275380 9/22 (41%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
leucine-rich repeat 301..322 CDD:275380 7/27 (26%)
leucine-rich repeat 326..350 CDD:275380 9/23 (39%)
leucine-rich repeat 351..373 CDD:275380 6/43 (14%)
LRRCT 382..434 CDD:214507 12/54 (22%)
2mitNP_001262529.1 LRR <106..458 CDD:443914 89/362 (25%)
leucine-rich repeat 124..143 CDD:275380 6/21 (29%)
leucine-rich repeat 144..167 CDD:275380 5/22 (23%)
leucine-rich repeat 172..194 CDD:275380 4/21 (19%)
leucine-rich repeat 195..218 CDD:275380 8/22 (36%)
leucine-rich repeat 219..242 CDD:275380 7/22 (32%)
leucine-rich repeat 243..311 CDD:275380 19/67 (28%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
leucine-rich repeat 336..359 CDD:275380 9/23 (39%)
leucine-rich repeat 360..380 CDD:275380 5/19 (26%)
leucine-rich repeat 381..404 CDD:275380 0/22 (0%)
leucine-rich repeat 405..449 CDD:275380 14/49 (29%)

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