Protein Alignment trn and Lrrc24

DIOPT Version :10

• Sequence 1: NP_001261796.1
• Gene: trn / 39491
• FlyBaseID: FBgn0010452
• Length: 751
• Species: Drosophila melanogaster
• Sequence 2: NP_001129368.1
• Gene: Lrrc24 / 362945
• RGDID: 1308720
• Length: 521
• Species: Rattus norvegicus
• Alignment Length: 474
• Identity: 104/474 - (21%)
• Similarity: 163/474 - (34%)
• Gaps: 193/474 - (40%)

  Fly     5 MMIAFVGIWCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSN 69
            :::..:|:..:....|:.|.|  ..||..|:|...|  |:||..:|.|:|..:.|..|.|.
  Rat     8 LLLLLLGLLLLPLLPGLPPRA--TGCPAACRCYSAT--VECGALRLRVVPPGIPPGTQTLF---- 64

  Fly    70 KIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTV 134
                                                                             
  Rat    65 ----------------------------------------------------------------- 64

  Fly   135 LNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIF 199
              |:.|.|:.|.||...|                        |:.||.|||.:
  Rat    65 --LQDNSIAHLEQGALAP------------------------LAALRHLYLHN------------ 91

  Fly   200 QAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLD 264
                         |||:::::.||:....|..|.|.|..||.:...:|:||.:||:|.|:.|:|.
  Rat    92 -------------NTLRALESGAFRAQPRLLELALTGNRLRGLRGGAFVGLVQLRVLYLAGNQLA 143

  Fly   265 RIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYL 329
            ::.......|.||::|.|.:|..|::.:.|..||                         .:|..|
  Rat   144 KLLDFTFLHLPRLQELHLQENSIELLEDQALAGL-------------------------SSLALL 183

  Fly   330 NLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCRVMWL- 393
            :||.|::      |.:|                  .|.|.|...||.|.|:|||..|||.:.||
  Rat   184 DLSRNQL------GTIS------------------KEALQPLSSLQVLRLTENPWRCDCALHWLG 224

  Fly   394 -------HNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGC----THADPRK-QALIGA 446
                   ..||    :|:|  .::.|..|.||..:||..::...:.|    .:|:|.: .|.:|.
  Rat   225 SWIKEGGRRLL----SSRD--KKITCAEPPRLALQSLLEVSGGSLICIPPSVNAEPPELTANLGE 283

  Fly   447 -LLVGSAATITALALVLYR 464
             |.|...|:.....||::|
  Rat   284 DLQVACQASGYPQPLVVWR 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trn	NP_001261796.1	leucine-rich repeat	62..80	CDD:275380	2/17 (12%)
		LRR	82..406	CDD:443914	68/331 (21%)
		leucine-rich repeat	84..107	CDD:275380	0/22 (0%)
		leucine-rich repeat	108..131	CDD:275380	0/22 (0%)
		leucine-rich repeat	132..155	CDD:275380	7/22 (32%)
		leucine-rich repeat	156..179	CDD:275380	1/22 (5%)
		leucine-rich repeat	180..204	CDD:275380	5/23 (22%)
		leucine-rich repeat	205..228	CDD:275380	5/22 (23%)
		leucine-rich repeat	229..252	CDD:275380	9/22 (41%)
		leucine-rich repeat	253..276	CDD:275380	7/22 (32%)
		leucine-rich repeat	277..300	CDD:275380	8/22 (36%)
		leucine-rich repeat	301..322	CDD:275380	0/20 (0%)
		leucine-rich repeat	326..350	CDD:275380	7/23 (30%)
		leucine-rich repeat	351..373	CDD:275380	3/21 (14%)
		LRRCT	382..434	CDD:214507	18/63 (29%)
Lrrc24	NP_001129368.1	LRR	<61..>213	CDD:443914	60/320 (19%)
		leucine-rich repeat	61..83	CDD:275380	10/116 (9%)
		LRR_8	84..142	CDD:404697	24/82 (29%)
		leucine-rich repeat	84..107	CDD:275380	10/47 (21%)
		leucine-rich repeat	108..131	CDD:275380	9/22 (41%)
		leucine-rich repeat	132..155	CDD:275380	7/22 (32%)
		leucine-rich repeat	156..179	CDD:275380	8/47 (17%)
		leucine-rich repeat	180..203	CDD:275380	10/46 (22%)
		PCC	188..>259	CDD:188093	28/100 (28%)
		Ig_3	267..357	CDD:464046	10/36 (28%)