Protein Alignment trn and rdo

DIOPT Version :10

• Sequence 1: NP_001261796.1
• Gene: trn / 39491
• FlyBaseID: FBgn0010452
• Length: 751
• Species: Drosophila melanogaster
• Sequence 2: NP_001286024.1
• Gene: rdo / 35077
• FlyBaseID: FBgn0243486
• Length: 757
• Species: Drosophila melanogaster
• Alignment Length: 842
• Identity: 192/842 - (22%)
• Similarity: 310/842 - (36%)
• Gaps: 210/842 - (24%)

  Fly    13 WCILASIGVEPAAGLAN----CPPGCQC--DD-NTLVVQCGEGQLDVL--PIALNPSIQRLVIKS 68
            | :|.|:.:.||. .:|    ||..|||  || :.....|.:|.|:.|  |..|:..::.::|:.
  Fly     5 W-LLFSLCIMPAM-FSNTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRG 67

  Fly    69 NK-----------------IKTIDSSI------QFYA--ELTFLDLSSNHLMTIPQRTFAYQKKL 108
            .:                 ::..||::      .|:.  .|..||||.|::..|.:..|..|..|
  Fly    68 PRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNL 132

  Fly   109 QEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKA 173
            .|:.|:.||:.::::.||..|:.:..|||..|.|.||.|..|..|.:::.|:|..|.:..|.|..
  Fly   133 LELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDV 197

  Fly   174 FDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGAS 238
            |..:.:|::|...:..|..: :|.::..:|.|:||.||.|..:.:..|.|:|:|.||::.|.|..
  Fly   198 FRDVPELKVLKCRNCQLKKI-NPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQ 261

  Fly   239 LRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKR 303
            |..:....|...:.|..||||.|||.::|:....:|..|..|.|..|....:...:...|..|..
  Fly   262 LSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLT 326

  Fly   304 LEVNGALRLK-RVMTGAFSDNGNLEYLNLSSNKMLLE---------------VQEGALSGLSQLK 352
            |.::|.:.:. |.|...|..  .:.|..|:.:|:..:               :..|.|....||:
  Fly   327 LNISGNVLMDLREMRETFEP--LIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLR 389

  Fly   353 HVVLKANALTSLA-EGLFPWKDLQTLDLS------------------------ENPLSCD-CRVM 391
            ::.:..|:|.:.| |.:.|.::|:.||||                        .|||.|| |.:.
  Fly   390 YLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMG 454

  Fly   392 WLHNLLVAKNASQDDVSELLCEFPERLRGESLRHL-----------------NPAMMG---CTHA 436
            .|.|::.......|...  :|..|:.|||..:.:|                 |.|...   ..|.
  Fly   455 KLINVVRQLQWKWDTYP--ICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHG 517

  Fly   437 DPRKQALIGALLVGSAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYMS 501
            .....|::|.::.   ..|..:.|.|..|..|                .:.|.|.:    ||:::
  Fly   518 GLNTLAILGGIIF---VLIAVIILSLVACFSK----------------NRARYYTR----EDHLN 559

  Fly   502 RHQHHPCSLGIHSTFPNTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQKFQQLVVPTATMISEKK 566
            ..:.......:.:|...|......|..|....:...|....|   |:...|.|.:..|
  Fly   560 GSESKCLEKNLEATTITTLGNGSSPTTTTTLTLATSPAAPNG---PKTNGQGLSLSPA------- 614

  Fly   567 LNNNKALVSQGAIDDSA-----SFVLHMKSATMGRDVHQQNPQLNHYTKPQFLSATATVGDSCYS 626
               |.:....|..||..     :|.:..:..|:...:....|....:..|...|...:|..|..|
  Fly   615 ---NGSTPVHGISDDKGKEINFTFPVDDRVCTIDELMPSPPPPPQQHPHPNMGSLMYSVSHSPNS 676

  Fly   627 YADVPMVHGA----PLGGPNQPQLRLTQEHFKQRELYDQEMGSEILDHNYIYSNTHYSMPLEQLG 687
            ...:..|..|    |.|.|                                   :|.|||
  Fly   677 ATTLAAVAAAATVIPPGAP-----------------------------------SHSSMP----- 701

  Fly   688 RSKTPTPPPM--------PPALPLRNGLCATTGRRSFQQKSASQKQQQNNNTLRQFTHXSST 741
               ||||.|.        ||.||.:.      .........||.::.|     :|..|.|||
  Fly   702 ---TPTPTPAEAVVVVLPPPPLPPQQ------HHHQMDGSLASLREVQ-----QQLVHLSST 749

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trn	NP_001261796.1	leucine-rich repeat	62..80	CDD:275380	3/40 (8%)
		LRR	82..406	CDD:443914	100/367 (27%)
		leucine-rich repeat	84..107	CDD:275380	9/22 (41%)
		leucine-rich repeat	108..131	CDD:275380	8/22 (36%)
		leucine-rich repeat	132..155	CDD:275380	10/22 (45%)
		leucine-rich repeat	156..179	CDD:275380	6/22 (27%)
		leucine-rich repeat	180..204	CDD:275380	4/23 (17%)
		leucine-rich repeat	205..228	CDD:275380	9/22 (41%)
		leucine-rich repeat	229..252	CDD:275380	6/22 (27%)
		leucine-rich repeat	253..276	CDD:275380	10/22 (45%)
		leucine-rich repeat	277..300	CDD:275380	5/22 (23%)
		leucine-rich repeat	301..322	CDD:275380	6/21 (29%)
		leucine-rich repeat	326..350	CDD:275380	5/38 (13%)
		leucine-rich repeat	351..373	CDD:275380	6/22 (27%)
		LRRCT	382..434	CDD:214507	17/72 (24%)
rdo	NP_001286024.1	LRR	69..>446	CDD:443914	96/379 (25%)
		leucine-rich repeat	84..107	CDD:275380	3/22 (14%)
		leucine-rich repeat	108..131	CDD:275380	9/22 (41%)
		leucine-rich repeat	132..155	CDD:275380	8/22 (36%)
		leucine-rich repeat	156..179	CDD:275380	10/22 (45%)
		leucine-rich repeat	180..203	CDD:275380	6/22 (27%)
		leucine-rich repeat	204..251	CDD:275380	14/47 (30%)
		leucine-rich repeat	252..275	CDD:275380	6/22 (27%)
		leucine-rich repeat	276..299	CDD:275380	10/22 (45%)
		leucine-rich repeat	300..323	CDD:275380	5/22 (23%)
		leucine-rich repeat	388..411	CDD:275380	6/22 (27%)