DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and CG4168

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster


Alignment Length:503 Identity:131/503 - (26%)
Similarity:213/503 - (42%) Gaps:122/503 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 IQRLVIKSNKIKTID----SSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQI 121
            :|.|.::||:::||.    .:::|   |.:||||.|.|:.|....|.....|..:.|.||::..:
  Fly   664 LQTLNLQSNRLRTIARHAFHNLEF---LRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSL 725

  Fly   122 SNKTFIGLSAVTV---LNLRGNQISELH---------------------QGTFTPLLK-IEELNL 161
            |.|:|:.:|..|.   ||:..|.|:..:                     ..:||.|.. :..|||
  Fly   726 SLKSFLYVSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNL 790

  Fly   162 GENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDL 226
            ..|::|.|...||..|..|.||.:..|.||::... .||.:.||.||.|..|.|..:|.:.|.:|
  Fly   791 AHNQLGSLQSHAFGDLEFLEILNVAHNNLTSLRRR-SFQGLNSLQELDLSHNQLDQLQVEQFSNL 854

  Fly   227 KGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIP-----SVGLSKLVRLEQLSLGQND 286
            :.|..|.:....||.:..:.|:..: |..||:::|:|...|     .:|.:    |..:.:..|:
  Fly   855 RKLRILRINSNRLRALPREVFMNTR-LEFLDIAENQLSVWPVPAFTDIGFT----LRSIQMSHNN 914

  Fly   287 FEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKML-------------- 337
            .|.:....|:..:.|..:.: ...|:..:....||...||..|:||.|.::              
  Fly   915 LEYLDASMFINSQFLYDISL-ARNRITILPDNTFSFLNNLTNLDLSQNPLVTTNLREVFVHTPRL 978

  Fly   338 -----------------------LEV-----QE-GALSGLSQLKHVVLKANALTS---LAEGLFP 370
                                   |:|     || ..|..|..|:||.:..|.||:   .||.|.|
  Fly   979 RKLSLHHMGLYVLPPLKLPLLSYLDVSGNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLPP 1043

  Fly   371 WKDLQTLDLSENPLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPE---RLRGESLRHLNPAMMG 432
              .::.|||:.|||    |.:.||:|...::.::.::.::....|:   :||  |||.|:.:   
  Fly  1044 --SVRVLDLAHNPL----RRITLHDLASLRHLAELNILDVKVTNPQAFSKLR--SLRKLHAS--- 1097

  Fly   433 CTHAD--------PRKQAL--------IGALLVGSAATITALALV-LY 463
             :||:        |..|.|        ||..|....|..|.:.|: ||
  Fly  1098 -SHANLGEIVARIPGLQQLRVHCLEPNIGQQLFAKLANNTKIRLLELY 1144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 6/21 (29%)
LRR_8 83..142 CDD:290566 21/61 (34%)
leucine-rich repeat 84..107 CDD:275380 9/22 (41%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
LRR_RI 129..421 CDD:238064 91/370 (25%)
LRR_8 132..190 CDD:290566 21/82 (26%)
leucine-rich repeat 132..155 CDD:275380 8/46 (17%)
leucine-rich repeat 156..179 CDD:275380 9/22 (41%)
leucine-rich repeat 180..204 CDD:275380 8/23 (35%)
LRR_8 203..263 CDD:290566 19/59 (32%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
LRR_8 252..308 CDD:290566 12/60 (20%)
leucine-rich repeat 253..276 CDD:275380 7/27 (26%)
leucine-rich repeat 277..300 CDD:275380 4/22 (18%)
leucine-rich repeat 301..322 CDD:275380 3/20 (15%)
LRR_8 325..384 CDD:290566 26/104 (25%)
leucine-rich repeat 326..350 CDD:275380 11/66 (17%)
leucine-rich repeat 351..373 CDD:275380 10/24 (42%)
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
LRR_8 482..545 CDD:290566
leucine-rich repeat 484..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
leucine-rich repeat 535..589 CDD:275380
LRR_RI 588..891 CDD:238064 68/231 (29%)
LRR_8 588..650 CDD:290566
leucine-rich repeat 590..613 CDD:275380
leucine-rich repeat 614..639 CDD:275380
LRR_8 638..698 CDD:290566 13/36 (36%)
leucine-rich repeat 640..663 CDD:275380
leucine-rich repeat 664..687 CDD:275380 6/22 (27%)
LRR_8 688..749 CDD:290566 21/60 (35%)
leucine-rich repeat 688..711 CDD:275380 9/22 (41%)
leucine-rich repeat 712..735 CDD:275380 7/22 (32%)
leucine-rich repeat 740..783 CDD:275380 7/42 (17%)
LRR_8 784..843 CDD:290566 23/59 (39%)
leucine-rich repeat 785..808 CDD:275380 9/22 (41%)
leucine-rich repeat 809..832 CDD:275380 8/23 (35%)
LRR_RI <827..1053 CDD:238064 57/233 (24%)
LRR_8 832..890 CDD:290566 19/58 (33%)
leucine-rich repeat 833..856 CDD:275380 9/22 (41%)
leucine-rich repeat 857..879 CDD:275380 5/21 (24%)
leucine-rich repeat 880..900 CDD:275380 6/19 (32%)
LRR_8 904..963 CDD:290566 14/63 (22%)
leucine-rich repeat 905..928 CDD:275380 4/22 (18%)
leucine-rich repeat 929..952 CDD:275380 4/23 (17%)
leucine-rich repeat 953..977 CDD:275380 5/23 (22%)
leucine-rich repeat 978..1020 CDD:275380 6/41 (15%)
LRR_8 1019..1074 CDD:290566 20/60 (33%)
leucine-rich repeat 1045..1068 CDD:275380 10/26 (38%)
leucine-rich repeat 1069..1090 CDD:275380 3/22 (14%)
leucine-rich repeat 1091..1114 CDD:275380 6/26 (23%)
leucine-rich repeat 1115..1161 CDD:275380 9/30 (30%)
leucine-rich repeat 1162..1190 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453497
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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