DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and CG5096

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_723576.1 Gene:CG5096 / 34410 FlyBaseID:FBgn0032235 Length:491 Species:Drosophila melanogaster


Alignment Length:484 Identity:133/484 - (27%)
Similarity:197/484 - (40%) Gaps:86/484 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 KIKTIDSSI----QFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLS 130
            |||.|||.:    ..|.:...||.|               :|||: .|:......::|    |..
  Fly    38 KIKVIDSKLCKKCNCYIDTNLLDCS---------------EKLQD-WLSAEDWEDLTN----GNV 82

  Fly   131 AVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTT--- 192
            ....:||..|.::.:   ...|...:|.|.|..|:|..:...||..|::|..|.|..|.||:   
  Fly    83 VFKTINLEHNNLTSV---PILPKYDVENLYLANNQIDSISVGAFQNLTELVTLDLSHNRLTSKVL 144

  Fly   193 VPD----PVI---FQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGAS---LRNISHDSF 247
            |||    |..   |:::.:|..|.||.|.|.|:.||.|:.:..:..|.|...|   :..:|..:.
  Fly   145 VPDVFKGPFTVQDFESLENLKTLNLGYNDLHSLDADLFEHIPHIEELVLCSNSFHVIDQLSETAI 209

  Fly   248 LGLQELRILDLSDNRLDRIPSV-----------------------GLSKLVRLEQLSLGQNDFE- 288
            .|||.|:|||:|...:|.:|..                       .|.....|..|.|.:|..| 
  Fly   210 SGLQSLKILDVSYMEIDDLPDTILHGPRDLEIFIAAGNLFNQLPKALKYATNLTSLVLNENPIEN 274

  Fly   289 VISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALS------- 346
            :|.:..|..|.:|..|.:....:|.::..||||:..:|..|.||.||:|.|:.|.|||       
  Fly   275 LIGDNVFPPLTKLTHLSMTFMSKLYKIGPGAFSELQSLTELILSDNKLLNEIDEEALSKNVTGGQ 339

  Fly   347 --GLSQLKHVVL-KANALTSLAEGLFPWKDLQTLDLSENPLSCDCRVMWLHNLLVAKNASQDDV- 407
              ....|:.|.| ..|..|...|.|..|..|:.|||..||.:||....:|.|:|:.:......| 
  Fly   340 YLDYPPLEKVYLNNCNVSTLPKELLVRWDKLKALDLRFNPWNCDESNDFLINVLIDRINKTTPVL 404

  Fly   408 -SELLCEFPERLRGES-LRHLNPAMMGCTHADPRKQALIGALLVGSAATITALALVLYRCRHKIR 470
             .::.|..|.:|...: ||..|..|:..:........|:..||:.....|.|..:....|....|
  Fly   405 AKDVKCGGPNKLNDVTLLRVANEHMIESSTGSLIWVGLLVVLLIAVPTIIGAYVMKRRGCFGVFR 469

  Fly   471 ETIKGGLWGNSALGRKEREYQKTFCDEDY 499
            ....|   .:|||      |.:|..:||:
  Fly   470 RHDSG---ASSAL------YNRTSFNEDF 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 6/13 (46%)
LRR 82..406 CDD:443914 103/370 (28%)
leucine-rich repeat 84..107 CDD:275380 3/22 (14%)
leucine-rich repeat 108..131 CDD:275380 5/22 (23%)
leucine-rich repeat 132..155 CDD:275380 4/22 (18%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..204 CDD:275380 11/33 (33%)
leucine-rich repeat 205..228 CDD:275380 10/22 (45%)
leucine-rich repeat 229..252 CDD:275380 6/25 (24%)
leucine-rich repeat 253..276 CDD:275380 8/45 (18%)
leucine-rich repeat 277..300 CDD:275380 8/23 (35%)
leucine-rich repeat 301..322 CDD:275380 6/20 (30%)
leucine-rich repeat 326..350 CDD:275380 12/32 (38%)
leucine-rich repeat 351..373 CDD:275380 8/22 (36%)
LRRCT 382..434 CDD:214507 15/54 (28%)
CG5096NP_723576.1 LRR 54..>322 CDD:443914 77/290 (27%)
leucine-rich repeat 85..104 CDD:275380 4/21 (19%)
leucine-rich repeat 105..128 CDD:275380 8/22 (36%)
leucine-rich repeat 129..163 CDD:275380 11/33 (33%)
leucine-rich repeat 164..187 CDD:275380 10/22 (45%)
leucine-rich repeat 188..214 CDD:275380 6/25 (24%)
leucine-rich repeat 215..238 CDD:275380 7/22 (32%)
leucine-rich repeat 239..261 CDD:275380 1/21 (5%)
leucine-rich repeat 262..286 CDD:275380 8/23 (35%)
leucine-rich repeat 287..311 CDD:275380 7/23 (30%)
leucine-rich repeat 346..369 CDD:275380 8/22 (36%)
leucine-rich repeat 370..388 CDD:275380 8/17 (47%)

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