Sequence 1: | NP_001261796.1 | Gene: | trn / 39491 | FlyBaseID: | FBgn0010452 | Length: | 751 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062037.1 | Gene: | Chad / 29195 | RGDID: | 2336 | Length: | 358 | Species: | Rattus norvegicus |
Alignment Length: | 451 | Identity: | 120/451 - (26%) |
---|---|---|---|
Similarity: | 186/451 - (41%) | Gaps: | 108/451 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MQRNMMIAFVGIWCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQLDVLPIA------LNP 59
Fly 60 SIQR---LVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQI 121
Fly 122 SNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLD 186
Fly 187 DNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQ 251
Fly 252 ELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVM 316
Fly 317 TGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSE 381
Fly 382 NPLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQA 442 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trn | NP_001261796.1 | leucine-rich repeat | 62..80 | CDD:275380 | 5/20 (25%) |
LRR_8 | 83..142 | CDD:290566 | 16/58 (28%) | ||
leucine-rich repeat | 84..107 | CDD:275380 | 4/22 (18%) | ||
leucine-rich repeat | 108..131 | CDD:275380 | 7/22 (32%) | ||
LRR_RI | 129..421 | CDD:238064 | 80/291 (27%) | ||
LRR_8 | 132..190 | CDD:290566 | 24/57 (42%) | ||
leucine-rich repeat | 132..155 | CDD:275380 | 10/22 (45%) | ||
leucine-rich repeat | 156..179 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 180..204 | CDD:275380 | 9/23 (39%) | ||
LRR_8 | 203..263 | CDD:290566 | 5/59 (8%) | ||
leucine-rich repeat | 205..228 | CDD:275380 | 2/22 (9%) | ||
leucine-rich repeat | 229..252 | CDD:275380 | 1/22 (5%) | ||
LRR_8 | 252..308 | CDD:290566 | 16/55 (29%) | ||
leucine-rich repeat | 253..276 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 277..300 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 301..322 | CDD:275380 | 1/20 (5%) | ||
LRR_8 | 325..384 | CDD:290566 | 20/58 (34%) | ||
leucine-rich repeat | 326..350 | CDD:275380 | 4/23 (17%) | ||
leucine-rich repeat | 351..373 | CDD:275380 | 10/21 (48%) | ||
Chad | NP_062037.1 | LRRNT | 22..48 | CDD:279764 | 8/25 (32%) |
LRR 1 | 51..72 | 6/22 (27%) | |||
leucine-rich repeat | 52..75 | CDD:275380 | 7/24 (29%) | ||
LRR_8 | 74..134 | CDD:290566 | 16/66 (24%) | ||
LRR 2 | 75..96 | 4/27 (15%) | |||
leucine-rich repeat | 76..99 | CDD:275380 | 4/22 (18%) | ||
LRR_RI | <89..281 | CDD:238064 | 70/265 (26%) | ||
LRR 3 | 99..120 | 6/20 (30%) | |||
leucine-rich repeat | 100..123 | CDD:275380 | 7/22 (32%) | ||
LRR 4 | 123..144 | 8/20 (40%) | |||
leucine-rich repeat | 124..147 | CDD:275380 | 10/22 (45%) | ||
LRR_8 | 147..206 | CDD:290566 | 22/107 (21%) | ||
LRR 5 | 147..168 | 7/20 (35%) | |||
leucine-rich repeat | 148..171 | CDD:275380 | 8/22 (36%) | ||
LRR 6 | 171..192 | 10/45 (22%) | |||
leucine-rich repeat | 172..195 | CDD:275380 | 11/47 (23%) | ||
LRR_8 | 195..255 | CDD:290566 | 20/97 (21%) | ||
LRR 7 | 195..216 | 7/44 (16%) | |||
leucine-rich repeat | 196..219 | CDD:275380 | 10/46 (22%) | ||
LRR 8 | 219..240 | 7/20 (35%) | |||
leucine-rich repeat | 220..243 | CDD:275380 | 7/36 (19%) | ||
LRR_8 | 243..300 | CDD:290566 | 22/68 (32%) | ||
LRR 9 | 244..265 | 6/31 (19%) | |||
leucine-rich repeat | 245..268 | CDD:275380 | 7/33 (21%) | ||
LRR 10 | 268..289 | 10/21 (48%) | |||
LRRCT | 299..346 | CDD:214507 | 15/53 (28%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 321..358 | 9/39 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24373 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.010 |