Sequence 1: | NP_001261796.1 | Gene: | trn / 39491 | FlyBaseID: | FBgn0010452 | Length: | 751 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001013780.2 | Gene: | Lingo3 / 237403 | MGIID: | 3609246 | Length: | 589 | Species: | Mus musculus |
Alignment Length: | 449 | Identity: | 119/449 - (26%) |
---|---|---|---|
Similarity: | 189/449 - (42%) | Gaps: | 85/449 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 14 CILASIGVE----PAAGL-ANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKT 73
Fly 74 IDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLR 138
Fly 139 GNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMP 203
Fly 204 SLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFL---GLQELRI---------- 255
Fly 256 -----------LDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGA 309
Fly 310 LRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLF-PWKD 373
Fly 374 LQTLDLSENPLSCDCRVMWLHNLLVAKNASQDDVSEL-LCEFPERLRGESLRHLNPAMM 431 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trn | NP_001261796.1 | leucine-rich repeat | 62..80 | CDD:275380 | 0/17 (0%) |
LRR_8 | 83..142 | CDD:290566 | 21/58 (36%) | ||
leucine-rich repeat | 84..107 | CDD:275380 | 5/22 (23%) | ||
leucine-rich repeat | 108..131 | CDD:275380 | 9/22 (41%) | ||
LRR_RI | 129..421 | CDD:238064 | 84/317 (26%) | ||
LRR_8 | 132..190 | CDD:290566 | 22/57 (39%) | ||
leucine-rich repeat | 132..155 | CDD:275380 | 11/22 (50%) | ||
leucine-rich repeat | 156..179 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 180..204 | CDD:275380 | 6/23 (26%) | ||
LRR_8 | 203..263 | CDD:290566 | 18/83 (22%) | ||
leucine-rich repeat | 205..228 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 229..252 | CDD:275380 | 6/25 (24%) | ||
LRR_8 | 252..308 | CDD:290566 | 14/76 (18%) | ||
leucine-rich repeat | 253..276 | CDD:275380 | 5/43 (12%) | ||
leucine-rich repeat | 277..300 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 301..322 | CDD:275380 | 5/20 (25%) | ||
LRR_8 | 325..384 | CDD:290566 | 15/59 (25%) | ||
leucine-rich repeat | 326..350 | CDD:275380 | 4/23 (17%) | ||
leucine-rich repeat | 351..373 | CDD:275380 | 6/22 (27%) | ||
Lingo3 | NP_001013780.2 | LRRNT | 23..55 | CDD:214470 | 11/54 (20%) |
leucine-rich repeat | 34..53 | CDD:275380 | 6/41 (15%) | ||
LRR 1 | 54..75 | 5/20 (25%) | |||
LRR | <55..353 | CDD:227223 | 85/324 (26%) | ||
leucine-rich repeat | 55..78 | CDD:275380 | 5/22 (23%) | ||
LRR 2 | 78..99 | 8/20 (40%) | |||
leucine-rich repeat | 79..102 | CDD:275380 | 9/22 (41%) | ||
LRR 3 | 102..123 | 9/20 (45%) | |||
leucine-rich repeat | 103..150 | CDD:275380 | 18/46 (39%) | ||
LRR 4 | 126..147 | 6/20 (30%) | |||
LRR 5 | 150..171 | 6/21 (29%) | |||
leucine-rich repeat | 151..174 | CDD:275380 | 6/23 (26%) | ||
LRR 6 | 174..195 | 7/20 (35%) | |||
leucine-rich repeat | 175..198 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 199..222 | CDD:275380 | 4/22 (18%) | ||
LRR 7 | 206..227 | 3/20 (15%) | |||
leucine-rich repeat | 223..246 | CDD:275380 | 3/22 (14%) | ||
LRR_8 | 246..302 | CDD:338972 | 12/55 (22%) | ||
LRR 8 | 246..267 | 3/20 (15%) | |||
leucine-rich repeat | 247..270 | CDD:275380 | 3/22 (14%) | ||
LRR 9 | 270..291 | 6/20 (30%) | |||
leucine-rich repeat | 271..292 | CDD:275380 | 6/20 (30%) | ||
LRR 10 | 294..315 | 7/46 (15%) | |||
leucine-rich repeat | 295..318 | CDD:275380 | 9/48 (19%) | ||
LRR 11 | 318..339 | 7/20 (35%) | |||
leucine-rich repeat | 321..342 | CDD:275380 | 6/20 (30%) | ||
PCC | 331..>405 | CDD:188093 | 22/71 (31%) | ||
I-set | 406..496 | CDD:369462 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24373 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R6410 |
SonicParanoid | 1 | 1.000 | - | - | X1280 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 4.040 |