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Protein Alignment trn and Cd180

DIOPT Version :9

Sequence 1:	NP_001261796.1	Gene:	trn / 39491	FlyBaseID:	FBgn0010452	Length:	751	Species:	Drosophila melanogaster
Sequence 2:	NP_032559.2	Gene:	Cd180 / 17079	MGIID:	1194924	Length:	661	Species:	Mus musculus

Alignment Length:	632	Identity:	142/632 - (22%)
Similarity:	210/632 - (33%)	Gaps:	235/632 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly    44 QCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKL 108
            :|.|...:|||...|.:..||:                 .||||||:...:..|.:.||..|.:|
Mouse    56 ECLEFSFNVLPTIQNTTFSRLI-----------------NLTFLDLTRCQIYWIHEDTFQSQHRL 103

  Fly   109 QEVHLNHNKI---------------------GQISNKTFIGL---SAVTVLNLRGNQISELHQGT 149
            ..:.|..|.:                     ..||:..||.|   ..:..|.|..|.||.:....
Mouse   104 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 168

  Fly   150 FTPLLKIEELNLGENRIGYLDPKAFDGLSQLR--ILYLDDNALTTVP----DPVIFQAM-----P 203
            ..|..|::.|:...|.|.||..:....|.|..  .|.|:.|.:..:.    |..:||::     .
Mouse   169 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIELGAFDSAVFQSLNFGGTQ 233

  Fly   204 SLAELFLGM--NTLQSIQADAFQDL----------KGLTRLELKGASLR-----NISHDS---FL 248
            :|..:|.|:  :|:||:....|:|:          :||..:.::..:|:     |||.::   |.
Mouse   234 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 298

  Fly   249 GLQELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFE---VISEGAFMGLKQL------KRL 304
            ||||   |||:...|..:|| ||..|..|::|.|..|.||   .||...|..|..|      |||
Mouse   299 GLQE---LDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 359

  Fly   305 EV--------------------------------------------NGALRLKRVMTGAFSDNGN 325
            |:                                            |..|.||   |.||.:...
Mouse   360 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK---TEAFKECPQ 421

  Fly   326 LE-------------------------------------------------YLNLSSNKM----- 336
            ||                                                 :|||..|..
Mouse   422 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 486

  Fly   337 ---------------------LLEVQEGALSGLSQLKHVVLKANALTSLA-EGLFPWKDL----- 374
                                 |..:.:.|.:.|..:.||.|..|.|||.: |.|...|.:
Mouse   487 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 551

  Fly   375 ------------------QTLDLSENPLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRGE 421
                              :|::|.:|||.|.|..::............:|..:.|||.|..|||.
Mouse   552 SNRISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGV 616

  Fly   422 SLRHLNPAMMGCTHADPRKQALIGALLVGSAATITALALVL-YRCRH 467
               .|:...:.|:.|......||..|||.:...|.|:...| ::.:|
Mouse   617 ---RLSDVTLSCSMAAVGIFFLIVFLLVFAILLIFAVKYFLRWKYQH 660

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.