DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and LOC1278814

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_061500236.1 Gene:LOC1278814 / 1278814 VectorBaseID:AGAMI1_008860 Length:365 Species:Anopheles gambiae


Alignment Length:322 Identity:75/322 - (23%)
Similarity:124/322 - (38%) Gaps:76/322 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VLPIALNPSIQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHN 116
            |..:.:..:|::|.::.|.::|::...:....:.:|.|..|.|.:|..  |.:..:|.|::|..|
Mosquito    98 VTTLTMPSTIEQLYLRDNGLRTVEIDPRARYIVRYLRLQMNKLRSIAH--FEHLTQLHELNLCDN 160

  Fly   117 KIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTP----LLKIEELNLGENRIGYLDPKAFDGL 177
            .|..:...||..:.|:..|.|.||.|..|  || ||    |..:..|:||.|.:..|..:.:. |
Mosquito   161 LIEAVPLDTFATMPALRQLILCGNHIKTL--GT-TPTVIQLPALTHLDLGGNFLASLPLERWQ-L 221

  Fly   178 SQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNI 242
            .||..|.:.||.|||:...::....|.                                      
Mosquito   222 PQLINLSVRDNLLTTLDSGLLVWRFPL-------------------------------------- 248

  Fly   243 SHDSFLGLQELRILDLSDNRLD-RIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEV 306
                      |||||.|.|.|| ......|...|....:.|.......:.:...:..::::|  .
Mosquito   249 ----------LRILDASANALDCHSYHQALQTFVNRSVVHLIDRRMCSVDDAIVLDAEEMRR--P 301

  Fly   307 NGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLE--VQEGALSGLSQLKHVVLKANALTSLAE 366
            ||      :...|...||.||..:|.....|.:  :|:      .:::...|:|| ||:|.|
Mosquito   302 NG------IKPAAAEGNGPLEVRHLKERIFLQQRTIQQ------QRMEIEQLRAN-LTTLME 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 3/17 (18%)
LRR 82..406 CDD:443914 70/292 (24%)
leucine-rich repeat 84..107 CDD:275380 6/22 (27%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
leucine-rich repeat 132..155 CDD:275380 11/26 (42%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..204 CDD:275380 7/23 (30%)
leucine-rich repeat 205..228 CDD:275380 0/22 (0%)
leucine-rich repeat 229..252 CDD:275380 0/22 (0%)
leucine-rich repeat 253..276 CDD:275380 10/23 (43%)
leucine-rich repeat 277..300 CDD:275380 1/22 (5%)
leucine-rich repeat 301..322 CDD:275380 4/20 (20%)
leucine-rich repeat 326..350 CDD:275380 5/25 (20%)
leucine-rich repeat 351..373 CDD:275380 7/16 (44%)
LRRCT 382..434 CDD:214507
LOC1278814XP_061500236.1 None
Blue background indicates that the domain is not in the aligned region.

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