DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and LOC1278321

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_061518133.1 Gene:LOC1278321 / 1278321 VectorBaseID:AGAMI1_010421 Length:565 Species:Anopheles gambiae


Alignment Length:559 Identity:316/559 - (56%)
Similarity:414/559 - (74%) Gaps:29/559 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RNMMIAF-----VGIWCILASIGVEP--AAGLANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPS 60
            |.||::.     ||: .:.|::.|.|  ||||||||.||||||:||||.|||||||||||.||||
Mosquito    17 RGMMLSLLVAVTVGM-VMAAAVVVSPVEAAGLANCPLGCQCDDDTLVVTCGEGQLDVLPIVLNPS 80

  Fly    61 IQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKT 125
            :||||||:|||||||||:||||||||||||.|||..:|.||||||:||.|:||||||:|.|:|||
Mosquito    81 LQRLVIKNNKIKTIDSSMQFYAELTFLDLSYNHLFNMPPRTFAYQRKLTELHLNHNKVGSITNKT 145

  Fly   126 FIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNAL 190
            |:||.|:||||||||.:.||.:|.|..:.|:||||||:|||..:|||||.||:.||:||||||.:
Mosquito   146 FVGLVALTVLNLRGNFLDELPEGVFAGVPKLEELNLGQNRIAKIDPKAFAGLTGLRVLYLDDNTI 210

  Fly   191 TTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRI 255
            :.||.|.: |.:.:|.||::|:|:..:|..:||..|.||.:|:|:||:|.|:|.|||.||:.||.
Mosquito   211 SAVPSPAL-QPLRALGELYIGLNSFAAIPKEAFAMLTGLAKLDLEGAALLNVSRDSFRGLERLRT 274

  Fly   256 LDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAF 320
            ||||||||.|||:..|:.|.|||:|||||||||.|...||.||..|:.|:::|:|:|.|:.:|||
Mosquito   275 LDLSDNRLARIPTAELAVLERLEELSLGQNDFEAIPPNAFAGLNNLRVLDISGSLKLTRIESGAF 339

  Fly   321 SDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLS 385
            :.|.|||.:.::|||||.|||:||||||..|:.||||.||||:|.:|:..|.||..||||||.:.
Mosquito   340 AHNTNLEEIVIASNKMLTEVQDGALSGLPHLRRVVLKDNALTTLTDGMLSWNDLVELDLSENLIL 404

  Fly   386 CDCRVMWLHNLLVAKN------ASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALI 444
            |||:::||.||||:::      |:|.  ..::|..|:||||:.|:.|:|.::||||.|.::||:|
Mosquito   405 CDCQILWLRNLLVSRSNGTVGAAAQQ--IPVVCASPDRLRGQVLQSLSPELLGCTHPDRQQQAII 467

  Fly   445 GALLVGSAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYMSRHQHHP-- 507
            ..:||.:||.:|.||||:|:||.:|:|.:||. ||::.:|||||||||||.:|||.:||. ||  
Mosquito   468 CVVLVSAAAVLTTLALVIYKCRRRIQEAVKGS-WGSNGIGRKEREYQKTFSEEDYSARHP-HPGP 530

  Fly   508 --CSLGIHSTFPNTY--TAPHHPGATHHYGMCPMPVNDL 542
              ..|.||.|..|.|  ...||    |.:|:..:||.:|
Mosquito   531 PGGGLAIHPTTLNNYQINHQHH----HSHGIRHIPVTEL 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 15/17 (88%)
LRR 82..406 CDD:443914 191/329 (58%)
leucine-rich repeat 84..107 CDD:275380 17/22 (77%)
leucine-rich repeat 108..131 CDD:275380 16/22 (73%)
leucine-rich repeat 132..155 CDD:275380 12/22 (55%)
leucine-rich repeat 156..179 CDD:275380 16/22 (73%)
leucine-rich repeat 180..204 CDD:275380 12/23 (52%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 13/22 (59%)
leucine-rich repeat 253..276 CDD:275380 15/22 (68%)
leucine-rich repeat 277..300 CDD:275380 16/22 (73%)
leucine-rich repeat 301..322 CDD:275380 9/20 (45%)
leucine-rich repeat 326..350 CDD:275380 16/23 (70%)
leucine-rich repeat 351..373 CDD:275380 12/21 (57%)
LRRCT 382..434 CDD:214507 22/57 (39%)
LOC1278321XP_061518133.1 None

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