DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trn and LOC1270408

DIOPT Version :10

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_061508553.1 Gene:LOC1270408 / 1270408 VectorBaseID:AGAMI1_008706 Length:1403 Species:Anopheles gambiae


Alignment Length:520 Identity:121/520 - (23%)
Similarity:197/520 - (37%) Gaps:132/520 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CILASIGV--EPAA---GLANCPPGC----------------QCDDNTLVVQCGEGQLDVLPI-- 55
            |.|||:..  .|..   .|...|..|                .||..||......|    :||  
Mosquito    15 CALASVSCAWRPCTDLDALLKIPCRCNIETAGNNSQYVFVNVNCDRTTLTAPFPSG----IPIIS 75

  Fly    56 ---------------ALNPSIQRLVIKSNKIKTIDSS---------------------------- 77
                           .||..:::|...:|.:::|.:.                            
Mosquito    76 FSQRNSGHQALPDLSILNAPVRKLDFSNNALRSIGTKALFGSLAEYLTELRLANNLLGDSLNPIF 140

  Fly    78 ----IQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLR 138
                :|....|..||||.|.::.:.:..|...::|.|::|:.|||..:.......|:::.:|:||
Mosquito   141 STDVLQALQSLKVLDLSGNRIIALEESIFDGNRRLVELYLDQNKIATVPVAAVKELTSLKLLSLR 205

  Fly   139 GNQISELHQGTFTPLLKIEELNLGENRI------------------------GYLDPKAFDGLSQ 179
            .|:|..|....|....|:|.|:|..|||                        .::|.:|..|:..
Mosquito   206 SNRIESLEPDAFNFANKLERLDLRNNRIRTLKSKAFANLASMKEVLLAGNQLSHIDERALAGMDV 270

  Fly   180 LRILYLDDNALTTVPDPVI-----------------------FQAMPSLAELFLGMNTLQSIQAD 221
            |:.|.|.||.|:..|...:                       ...|.||..|.:..||:.:|...
Mosquito   271 LQKLDLSDNLLSEFPSEALGSVVSLKVLNISLNNIGKLESNHLAQMKSLQILDISRNTIATILPG 335

  Fly   222 AFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQND 286
            .|::...|..|:|...|||.|..|:|.||..|:.|.|.||.:..||...|.:|.:|..|.|..|.
Mosquito   336 TFREQLLLKYLDLSLNSLRTIEDDAFEGLDNLQTLILRDNNILFIPGSALGRLPKLSNLYLDFNR 400

  Fly   287 FEVISEGAFMGL--KQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGL- 348
            ...:|......:  :.::.|.::..: ::.:...:|:....|.||::|.|.:.: :.|....|| 
Mosquito   401 VAALSSSILKSIQPENIRYLSLSRNV-IRELPGDSFAAFRKLIYLDISGNSLGV-IGEDTFKGLE 463

  Fly   349 SQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCRV---MWLHNLLVAKNASQDDVSEL 410
            ..|..:.|..|.:.||.:.:.|  .|:.||||.|.:. |..:   ..|||||....:..:.|.::
Mosquito   464 GTLLEIKLSFNRIASLRKFVLP--KLRRLDLSANSID-DLAIDSFHSLHNLLYLNMSGNEHVGQV 525

  Fly   411  410
            Mosquito   526  525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 3/49 (6%)
LRR 82..406 CDD:443914 99/376 (26%)
leucine-rich repeat 84..107 CDD:275380 7/22 (32%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
leucine-rich repeat 132..155 CDD:275380 7/22 (32%)
leucine-rich repeat 156..179 CDD:275380 9/46 (20%)
leucine-rich repeat 180..204 CDD:275380 8/46 (17%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 11/22 (50%)
leucine-rich repeat 253..276 CDD:275380 9/22 (41%)
leucine-rich repeat 277..300 CDD:275380 5/24 (21%)
leucine-rich repeat 301..322 CDD:275380 2/20 (10%)
leucine-rich repeat 326..350 CDD:275380 8/24 (33%)
leucine-rich repeat 351..373 CDD:275380 6/21 (29%)
LRRCT 382..434 CDD:214507 8/32 (25%)
LOC1270408XP_061508553.1 None

Return to query results.
Submit another query.