DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and elfn2a

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001352873.1 Gene:elfn2a / 103909578 ZFINID:ZDB-GENE-080327-26 Length:933 Species:Danio rerio


Alignment Length:750 Identity:161/750 - (21%)
Similarity:251/750 - (33%) Gaps:234/750 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 TIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELN 160
            ||||.   ....:.::.||.||:..|...:....:.:|.|||..|:||.:..|.|.....::.|.
Zfish    60 TIPQH---INNTVHDLRLNENKLKAIFFSSLSRFTNLTDLNLTKNEISYIEDGAFAGQANLQVLQ 121

  Fly   161 LGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQD 225
            ||.|::..|......||.:::.|||..|.:..:.....::. |||:.|.|..|.|..:.|..|..
Zfish   122 LGYNKLTNLTEGMLRGLGRMQCLYLQHNLIEVIATNAFWEC-PSLSSLDLSSNKLAKLDASTFTV 185

  Fly   226 LKG-LTRLELKGASLRNISH---DSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQLS----L 282
            |.| |...||.|    |..|   |.:..|..|...|...:..||:......:|.....:|    .
Zfish   186 LGGRLIVCELAG----NPFHCGCDLYTFLIWLEAFDNVTHTYDRLLCETPKELFGYPLVSPRGNH 246

  Fly   283 GQNDFEVIS----EGAFMGLKQLKRLEVNGALRLKRVMTGA------------------------ 319
            |:|...::|    :|..:|          |...|...:..:                        
Zfish   247 GRNARSILSSMCKDGVIVG----------GITALPPDLDSSGMEIDFYDQMGPHMQPTASSTTDP 301

  Fly   320 -FSDNGNLEYLNLSSNKMLLEVQE--GALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSE 381
             :|.|..|:.::.|:..:|:::.:  ..:..|.|..|        |.:::.:......||:.|: 
Zfish   302 TYSPNIRLQTVSFSTASLLVQIPKPYSKMYILVQYNH--------TYVSDVINLKNKKQTVTLN- 357

  Fly   382 NPLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRG-ESLR-------HLNPAMMGCTHADP 438
                 |.:....:...||...:....:.....|..|..| :.||       |....::||     
Zfish   358 -----DLKPHTNYTFCVASIRNSQRYNHTCLNFATRAPGPDDLRAGRSTTTHYIMTILGC----- 412

  Fly   439 RKQALIGALLVGSAATITALALVLYRCRHK-----------IRETIKGGLWG--NSALGRKEREY 490
                |.|.::|        |.||.|..|.:           :::||....:|  .:|...|:...
Zfish   413 ----LFGMVIV--------LGLVYYCLRRRRMQEEKEKSISVKKTILEMRYGPEAAAAAAKDPSA 465

  Fly   491 QKTFCDEDYMSRHQHH--------PCSLGIHSTFPNT--------------YTAPHHPGATH--H 531
            .:...|:   |.||||        ..||||.....||              .||.....||.  :
Zfish   466 LQKLHDQ---SHHQHHHSKLSQSASSSLGILHGSANTTSSRLSSLPQVEKMATAFSEAMATSKGN 527

  Fly   532 YGMCPMPVNDLGAIDPQQKFQQLVVPTATMISEKKLNNNKALVSQGAID-------DSASFVLHM 589
            |    |.|...|.  .:|....:|..:...||..:...|      |..|       ||.|.:   
Zfish   528 Y----MDVRTAGR--EEQMRDGVVSGSGDEISRDENGIN------GGDDSDDDDGRDSTSEI--- 577

  Fly   590 KSATMGRDVHQQNPQLNHYTKPQFL---------SATATVGDSCYSYADVPMVHGAPLGGPNQPQ 645
              :|:.::|.:.|..:|:......|         :||||..||.   |..|        .||.| 
Zfish   578 --STIAKEVDKVNQIINNCIDALKLDSVAVVAAAAATATTADST---ASPP--------PPNVP- 628

  Fly   646 LRLTQEHFKQRELYDQEMGSEILDHNYIYSNTHYSMPL--------EQLGRSKTPTPPPMPPALP 702
                                         |:....:||        :.:...|...||.:|..||
Zfish   629 -----------------------------SSVRGLIPLSPTITETCQIMSSPKIRPPPTVPLVLP 664

  Fly   703 L--RNGLC--------------ATTGRRSFQQKSA 721
            |  |.|:.              ||..|...:|.||
Zfish   665 LSERPGISGGGFLSPPYRDPPPATASRPLQRQLSA 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380
LRR_8 83..142 CDD:290566 14/45 (31%)
leucine-rich repeat 84..107 CDD:275380 4/10 (40%)
leucine-rich repeat 108..131 CDD:275380 5/22 (23%)
LRR_RI 129..421 CDD:238064 70/331 (21%)
LRR_8 132..190 CDD:290566 20/57 (35%)
leucine-rich repeat 132..155 CDD:275380 9/22 (41%)
leucine-rich repeat 156..179 CDD:275380 7/22 (32%)
leucine-rich repeat 180..204 CDD:275380 4/23 (17%)
LRR_8 203..263 CDD:290566 21/63 (33%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 8/25 (32%)
LRR_8 252..308 CDD:290566 11/63 (17%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
leucine-rich repeat 277..300 CDD:275380 6/30 (20%)
leucine-rich repeat 301..322 CDD:275380 2/45 (4%)
LRR_8 325..384 CDD:290566 10/60 (17%)
leucine-rich repeat 326..350 CDD:275380 4/25 (16%)
leucine-rich repeat 351..373 CDD:275380 2/21 (10%)
elfn2aNP_001352873.1 leucine-rich repeat 72..92 CDD:275378 5/19 (26%)
LRR_8 91..151 CDD:316378 20/59 (34%)
leucine-rich repeat 93..116 CDD:275378 9/22 (41%)
leucine-rich repeat 117..140 CDD:275378 7/22 (32%)
leucine-rich repeat 141..163 CDD:275378 4/22 (18%)
leucine-rich repeat 165..189 CDD:275380 8/23 (35%)
TPKR_C2 198..>234 CDD:326558 8/35 (23%)
FN3 306..372 CDD:328772 14/79 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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