DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and lrrn1

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_002938357.1 Gene:lrrn1 / 100492182 XenbaseID:XB-GENE-18030784 Length:718 Species:Xenopus tropicalis


Alignment Length:441 Identity:124/441 - (28%)
Similarity:196/441 - (44%) Gaps:56/441 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ILASIGVEPAAGLANCPPGCQCD-----------DNTLVVQCGEGQLDVLPIALNPSIQRLVIKS 68
            :|.|...:.:|....||..|.|:           .....|.|.:.:|..:|..|:...|.|:::|
 Frog    18 LLTSSLTDSSAPANECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLTKIPANLSLDTQVLLLQS 82

  Fly    69 NKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVT 133
            |.|...:..:|....||.||||.|:..:|           |:|.|::             ||.:|
 Frog    83 NNIGKTNGELQRLFNLTELDLSQNNFTSI-----------QDVGLSN-------------LSQLT 123

  Fly   134 VLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVI 198
            .|:|..|||.|:.......|:.::||.:..|::..:.|.||.||..|..|:|:.|.|..: |...
 Frog   124 TLHLEENQIFEMTDYCLQDLINLQELYINHNQLNSISPSAFSGLRNLLRLHLNSNKLRII-DSRW 187

  Fly   199 FQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRL 263
            |::.|:|..|.:|.|.:..|....||.|..|..|.|.|..|.:|..::.|||..|..|...||:|
 Frog   188 FESTPNLEILMIGENPVIGILDFNFQPLVNLRSLVLAGMYLSDIPGNALLGLDNLESLSFYDNKL 252

  Fly   264 DRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEY 328
            .::|.:.|.|:..|:.|.|.:|....|.||.|..:.:||.|.:|....|..|...|..:...|..
 Frog   253 SKVPQLALQKVPNLKFLDLNKNPIRKIQEGDFKNMLKLKELGINNMAELVSVDRNALENLPELTK 317

  Fly   329 LNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGL---FPWKDLQTLDLSENPLSCDCRV 390
            |..::|..|..:...|...:..|:.::|..|||.|:..|.   .|  :|:.:.:..|||.|||.:
 Frog   318 LEATNNPKLSYIHRSAFRNVPTLESLMLNNNALNSVYRGTVESLP--NLREISIHSNPLRCDCVL 380

  Fly   391 MWLHNLLVAKNASQDDVS-----ELLCEFPERLRGESLRHL---NPAMMGC 433
            .|:       .::|..:.     .:.|..|...||:.::..   :||...|
 Frog   381 HWM-------GSNQTSIRFMEPLSMFCALPPEYRGQPVKEALAQDPAGEQC 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 5/17 (29%)
LRR_8 83..142 CDD:290566 17/58 (29%)
leucine-rich repeat 84..107 CDD:275380 8/22 (36%)
leucine-rich repeat 108..131 CDD:275380 4/22 (18%)
LRR_RI 129..421 CDD:238064 91/299 (30%)
LRR_8 132..190 CDD:290566 20/57 (35%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..204 CDD:275380 7/23 (30%)
LRR_8 203..263 CDD:290566 22/59 (37%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 9/22 (41%)
LRR_8 252..308 CDD:290566 19/55 (35%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 8/22 (36%)
leucine-rich repeat 301..322 CDD:275380 7/20 (35%)
LRR_8 325..384 CDD:290566 15/61 (25%)
leucine-rich repeat 326..350 CDD:275380 5/23 (22%)
leucine-rich repeat 351..373 CDD:275380 8/24 (33%)
lrrn1XP_002938357.1 LRRNT 33..76 CDD:214470 9/42 (21%)
LRR <70..350 CDD:227223 92/304 (30%)
leucine-rich repeat 75..97 CDD:275378 6/21 (29%)
leucine-rich repeat 98..121 CDD:275380 12/46 (26%)
leucine-rich repeat 122..145 CDD:275380 8/22 (36%)
leucine-rich repeat 146..169 CDD:275380 8/22 (36%)
leucine-rich repeat 170..193 CDD:275380 7/23 (30%)
leucine-rich repeat 194..217 CDD:275380 8/22 (36%)
leucine-rich repeat 218..241 CDD:275380 9/22 (41%)
leucine-rich repeat 242..265 CDD:275380 8/22 (36%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..314 CDD:275380 7/23 (30%)
leucine-rich repeat 315..336 CDD:275380 5/20 (25%)
leucine-rich repeat 340..363 CDD:275378 8/24 (33%)
leucine-rich repeat 364..376 CDD:275378 4/11 (36%)
LRRCT 372..418 CDD:214507 12/52 (23%)
I-set 431..518 CDD:369462
fn3 538..602 CDD:365830
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11458
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I4049
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm14097
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.960

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