DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and flrt1

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_017948905.2 Gene:flrt1 / 100486965 XenbaseID:XB-GENE-495403 Length:679 Species:Xenopus tropicalis


Alignment Length:454 Identity:114/454 - (25%)
Similarity:184/454 - (40%) Gaps:107/454 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKT--IDSSIQFYAELTFLDLSS 91
            |||..|:||:.  .:.|.:..|..:|..:......|.:::|:|..  :...::....:..:.|..
 Frog    60 NCPYVCRCDNG--FIYCNDRGLTSIPPDIPDDATTLYLQNNQINNAGVPPELKTKTNVKVIYLYE 122

  Fly    92 NHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKI 156
            |.|...|..   ....|:|:||..|.|..::..:   ||.:                   ||  |
 Frog   123 NDLDEFPVN---LPHSLRELHLQDNNIRSVTRDS---LSRI-------------------PL--I 160

  Fly   157 EELNLGENRIG--YLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMP-SLAELFLGMNTLQSI 218
            |:|:|.:|.:.  .::..||....|||:|:|..|.|:::|:     .:| :|.||.|..|.:.:|
 Frog   161 EKLHLDDNSVSTVSIEDDAFLDSHQLRLLFLSRNHLSSIPN-----GLPHTLEELRLDDNRISTI 220

  Fly   219 QADAFQDLKGLTRLELKGASLRN--ISHDSFLGLQELRILDLSDNRLD----RIPSVGLSKLVRL 277
            ...||:.|..|.||.|.|..|.|  |:.|:|..||.|..|.|..|.|.    .:||..|.||   
 Frog   221 PLHAFKGLNNLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPVNLPSTHLQKL--- 282

  Fly   278 EQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQE 342
                                                              ||   .:..:..:..
 Frog   283 --------------------------------------------------YL---QDNAITHIPY 294

  Fly   343 GALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLD---LSENPLSCDCRVMWLHNLLVAKNASQ 404
            .:||.:.||:.:.|.:|.||:|..|||  .||:.|.   |..||..|.|.:|||.:.:.|: |:.
 Frog   295 SSLSKMRQLQRLDLSSNNLTALPRGLF--DDLENLSQLLLRNNPWFCGCNLMWLRDWVKAR-AAV 356

  Fly   405 DDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVGSAATITALALVLYRCRHK 468
            .:|..|:|:.||::||.:::.:...:..|....|:..:.......||....|.....|:..:.|
 Frog   357 VNVRGLMCQGPEKVRGMAIKDITHELDECFEGGPQSNSASARATPGSPIITTPAQGSLFTLKSK 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 3/19 (16%)
LRR_8 83..142 CDD:290566 12/58 (21%)
leucine-rich repeat 84..107 CDD:275380 4/22 (18%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
LRR_RI 129..421 CDD:238064 84/303 (28%)
LRR_8 132..190 CDD:290566 15/59 (25%)
leucine-rich repeat 132..155 CDD:275380 2/22 (9%)
leucine-rich repeat 156..179 CDD:275380 7/24 (29%)
leucine-rich repeat 180..204 CDD:275380 8/24 (33%)
LRR_8 203..263 CDD:290566 26/62 (42%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 11/24 (46%)
LRR_8 252..308 CDD:290566 10/59 (17%)
leucine-rich repeat 253..276 CDD:275380 10/26 (38%)
leucine-rich repeat 277..300 CDD:275380 0/22 (0%)
leucine-rich repeat 301..322 CDD:275380 0/20 (0%)
LRR_8 325..384 CDD:290566 19/61 (31%)
leucine-rich repeat 326..350 CDD:275380 4/23 (17%)
leucine-rich repeat 351..373 CDD:275380 9/21 (43%)
flrt1XP_017948905.2 PRK15370 <65..>388 CDD:185268 105/415 (25%)
leucine-rich repeat 92..114 CDD:275378 3/21 (14%)
leucine-rich repeat 115..135 CDD:275380 4/22 (18%)
leucine-rich repeat 136..159 CDD:275380 8/44 (18%)
leucine-rich repeat 160..185 CDD:275380 7/24 (29%)
leucine-rich repeat 186..206 CDD:275380 8/24 (33%)
leucine-rich repeat 207..230 CDD:275380 9/22 (41%)
leucine-rich repeat 231..256 CDD:275380 11/24 (46%)
leucine-rich repeat 257..278 CDD:275380 7/20 (35%)
leucine-rich repeat 279..302 CDD:275380 7/78 (9%)
leucine-rich repeat 303..326 CDD:275380 11/24 (46%)
FN3 446..510 CDD:214495
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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