Protein Alignment trn and tlr3

DIOPT Version :9

• Sequence 1: NP_001261796.1
• Gene: trn / 39491
• FlyBaseID: FBgn0010452
• Length: 751
• Species: Drosophila melanogaster
• Sequence 2: XP_002934448.3
• Gene: tlr3 / 100486223
• XenbaseID: XB-GENE-491049
• Length: 897
• Species: Xenopus tropicalis
• Alignment Length: 522
• Identity: 132/522 - (25%)
• Similarity: 226/522 - (43%)
• Gaps: 96/522 - (18%)

  Fly    35 QCDDNTLVVQCGEGQLDVLPIA------LNP-------SIQRLVIK---SNKIKTIDSSIQFYAE 83
            |.|:::.|   ..|.|::|.:.      :||       .::.|.::   |:.:|..|.|.|....
 Frog   286 QIDNDSFV---SLGALEILNLENNDISHVNPKTFNGLSKVRVLNLRKSLSSNLKLDDLSFQSLHN 347

  Fly    84 LTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQ--ISNKTFIGLSAVTV--LNLRGNQISE 144
            :.:|::.:|.:::|.:.||.....|..:.|:.:.:.|  ::|:||:.||...:  |||....:::
 Frog   348 VQYLNMEANKIISITEHTFIGLTSLTNLSLSDSTLQQHTLTNRTFLSLSKSPLYHLNLTKTGLTK 412

  Fly   145 LHQGTFTPLLKIEELNLGENRIGY-LDPKAFDGLSQLRILYLDDN-ALTTVPDPVIFQAMPSLAE 207
            :..|.|..|..::.|::|.|:|.. :.....:||:.:.::||..| .:|...:..||  .|||::
 Frog   413 IENGAFLCLKHLQLLDMGLNQIDQEVSGNELEGLANIEMIYLSYNRRITLTSNSFIF--APSLSK 475

  Fly   208 LFLGMN--TLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRI---- 266
            |:|...  |.:.:....|:.|:.||.|:|...::.||..|.|..|..||||....|.|.|:
 Frog   476 LYLRKTALTFRDLNPSPFKVLQNLTVLDLSNNNIANIQEDVFESLSNLRILSFEHNNLARLWKEA 540

  Fly   267 ----PSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLE 327
                |.:.|..|..||:|||..|.|:.|...||.||.:||.|:: |...:..:....|.|..:|.
 Frog   541 NPGGPVLFLKGLKNLEKLSLLSNGFDEIPANAFKGLCKLKVLDI-GENNVYILPPSVFDDQHSLT 604

  Fly   328 YLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFP--WKDLQTLDLSENPLSCDCR- 389
            .|:|..                         |.:||:.:.||.  :..|:.|::..||..|.|.
 Frog   605 LLDLHK-------------------------NLITSVEQDLFKNVFSSLKYLNMGGNPYDCTCES 644

  Fly   390 VMWLHNLLVAKNASQDDV-SELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVG--S 451
            :.|..:.|...|.|.... |:.:|..|.|..|..:.:.:        :.|.|:.....|.|.  |
 Frog   645 IAWFASWLNTTNTSVPLAHSQYICNTPARYHGNPVDNFD--------SSPCKELAPFRLFVSTFS 701

  Fly   452 AATITALALVLYRCRHKIRETIKGGLWG---------NSALGRKEREYQKTFCDEDYMSRHQHHP 507
            ...:..|:::|.:        .:|  |.         |..||.||.:.:|...|.|....|..:.
 Frog   702 LMLVFILSVLLIQ--------FQG--WRIHFYWTVSINRILGFKEIDPRKRNFDYDAYIIHAQND 756

  Fly   508 CS 509
            .|
 Frog   757 VS 758

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trn	NP_001261796.1	leucine-rich repeat	62..80	CDD:275380	5/20 (25%)
		LRR_8	83..142	CDD:290566	16/62 (26%)
		leucine-rich repeat	84..107	CDD:275380	5/22 (23%)
		leucine-rich repeat	108..131	CDD:275380	7/24 (29%)
		LRR_RI	129..421	CDD:238064	87/309 (28%)
		LRR_8	132..190	CDD:290566	15/61 (25%)
		leucine-rich repeat	132..155	CDD:275380	6/24 (25%)
		leucine-rich repeat	156..179	CDD:275380	6/23 (26%)
		leucine-rich repeat	180..204	CDD:275380	6/24 (25%)
		LRR_8	203..263	CDD:290566	22/61 (36%)
		leucine-rich repeat	205..228	CDD:275380	6/24 (25%)
		leucine-rich repeat	229..252	CDD:275380	9/22 (41%)
		LRR_8	252..308	CDD:290566	25/63 (40%)
		leucine-rich repeat	253..276	CDD:275380	10/30 (33%)
		leucine-rich repeat	277..300	CDD:275380	12/22 (55%)
		leucine-rich repeat	301..322	CDD:275380	5/20 (25%)
		LRR_8	325..384	CDD:290566	11/60 (18%)
		leucine-rich repeat	326..350	CDD:275380	3/23 (13%)
		leucine-rich repeat	351..373	CDD:275380	5/23 (22%)
tlr3	XP_002934448.3	PLN00113	26..>507	CDD:215061	57/225 (25%)
		leucine-rich repeat	54..74	CDD:275380
		leucine-rich repeat	75..98	CDD:275380
		leucine-rich repeat	99..122	CDD:275380
		leucine-rich repeat	123..146	CDD:275380
		leucine-rich repeat	147..170	CDD:275380
		leucine-rich repeat	171..196	CDD:275380
		leucine-rich repeat	197..230	CDD:275380
		leucine-rich repeat	231..273	CDD:275380
		leucine-rich repeat	274..297	CDD:275380	3/13 (23%)
		leucine-rich repeat	298..319	CDD:275380	4/20 (20%)
		leucine-rich repeat	322..347	CDD:275380	6/24 (25%)
		leucine-rich repeat	348..371	CDD:275380	5/22 (23%)
		leucine-rich repeat	424..448	CDD:275380	6/23 (26%)
		PPP1R42	446..637	CDD:411060	62/218 (28%)
		leucine-rich repeat	449..472	CDD:275380	6/24 (25%)
		leucine-rich repeat	473..498	CDD:275380	6/24 (25%)
		leucine-rich repeat	499..522	CDD:275380	9/22 (41%)
		leucine-rich repeat	523..554	CDD:275380	10/30 (33%)
		leucine-rich repeat	555..578	CDD:275380	12/22 (55%)
		leucine-rich repeat	579..602	CDD:275380	6/23 (26%)
		leucine-rich repeat	603..623	CDD:275380	8/44 (18%)
		PCC	607..>689	CDD:188093	22/114 (19%)
		Tlr3_TMD	691..720	CDD:407816	7/38 (18%)
		TIR	746..890	CDD:214587	3/13 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24373
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010