DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and LOC100151059

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_017207970.1 Gene:LOC100151059 / 100151059 -ID:- Length:605 Species:Danio rerio


Alignment Length:432 Identity:117/432 - (27%)
Similarity:170/432 - (39%) Gaps:78/432 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSI 78
            |:|..:....|...:.|||.|.|......|.|...:|..:|..: |:..||              
Zfish    11 CVLGLLLALAAPSCSGCPPRCDCAAQLRSVSCQRRRLSAVPEGV-PTETRL-------------- 60

  Fly    79 QFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQIS 143
                    ||||.|.|..:.....|...:|:|:.|:.|.|..:....|..|.|:..|.||.||:.
Zfish    61 --------LDLSRNRLRWVAAGDLAPYPRLEELDLSENLISTLEPNAFANLQALRTLRLRANQLK 117

  Fly   144 ELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAEL 208
            .:..|.|..|..:..|:|.||||..|....|..|..|:.|.:.||.|..:.... |..:.||.:|
Zfish   118 LVPMGAFARLTNLTTLDLSENRIVILLDFTFQDLRSLKNLEVGDNDLVYISHKA-FSGLLSLEDL 181

  Fly   209 FLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSD------------- 260
            .:....|.||.......|:||..|.|:..|:..:...:|..|..||.|::.|             
Zfish   182 TMARCNLTSISGQTLSYLRGLVTLRLRHLSISTLEEQNFRKLTALRGLEIHDWPFLEFISPLSFQ 246

  Fly   261 -----------NRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKR 314
                       ..:..:||.....|..|..|:|..|....:...||..|.:||.|.:        
Zfish   247 GLNLSWLFITNTNITSVPSASFRNLAYLTALNLSYNPISTLESWAFRDLIRLKELHM-------- 303

  Fly   315 VMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLF-PWKDLQTLD 378
                            :|:|  ||.|:..||.||.|::.:.|..|.|.:|.|..| ....|:||.
Zfish   304 ----------------VSTN--LLTVEPHALGGLRQIRVLNLSNNDLVTLEESSFHSVNSLETLR 350

  Fly   379 LSENPLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRG 420
            :..||||||||::|   :|..:.....|....:|..|..::|
Zfish   351 VDGNPLSCDCRLLW---ILQRRRTLNFDGKMPVCAGPPEVQG 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 2/17 (12%)
LRR_8 83..142 CDD:290566 19/58 (33%)
leucine-rich repeat 84..107 CDD:275380 7/22 (32%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
LRR_RI 129..421 CDD:238064 89/317 (28%)
LRR_8 132..190 CDD:290566 21/57 (37%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 9/22 (41%)
leucine-rich repeat 180..204 CDD:275380 6/23 (26%)
LRR_8 203..263 CDD:290566 18/83 (22%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_8 252..308 CDD:290566 17/79 (22%)
leucine-rich repeat 253..276 CDD:275380 7/46 (15%)
leucine-rich repeat 277..300 CDD:275380 7/22 (32%)
leucine-rich repeat 301..322 CDD:275380 3/20 (15%)
LRR_8 325..384 CDD:290566 20/59 (34%)
leucine-rich repeat 326..350 CDD:275380 9/23 (39%)
leucine-rich repeat 351..373 CDD:275380 6/22 (27%)
LOC100151059XP_017207970.1 LRRNT 26..60 CDD:214470 10/34 (29%)
leucine-rich repeat 37..56 CDD:275380 4/19 (21%)
leucine-rich repeat 58..81 CDD:275380 9/44 (20%)
LRR_RI 61..332 CDD:238064 81/297 (27%)
LRR_8 80..140 CDD:290566 20/59 (34%)
leucine-rich repeat 82..105 CDD:275380 7/22 (32%)
leucine-rich repeat 106..129 CDD:275380 8/22 (36%)
LRR_8 128..188 CDD:290566 18/60 (30%)
leucine-rich repeat 130..153 CDD:275380 9/22 (41%)
leucine-rich repeat 154..177 CDD:275380 6/23 (26%)
leucine-rich repeat 178..201 CDD:275380 6/22 (27%)
leucine-rich repeat 202..225 CDD:275380 6/22 (27%)
leucine-rich repeat 226..249 CDD:275380 4/22 (18%)
LRR_8 249..308 CDD:290566 15/84 (18%)
leucine-rich repeat 250..273 CDD:275380 3/22 (14%)
leucine-rich repeat 274..295 CDD:275380 6/20 (30%)
LRR_8 297..356 CDD:290566 23/84 (27%)
leucine-rich repeat 298..321 CDD:275380 12/48 (25%)
leucine-rich repeat 322..342 CDD:275380 6/19 (32%)
leucine-rich repeat 346..358 CDD:275378 6/11 (55%)
TPKR_C2 354..394 CDD:301599 14/39 (36%)
I-set 409..499 CDD:254352
Ig 424..492 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6410
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.040

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