DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and lrrc3b

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001082985.1 Gene:lrrc3b / 100037364 ZFINID:ZDB-GENE-070410-55 Length:258 Species:Danio rerio


Alignment Length:137 Identity:37/137 - (27%)
Similarity:59/137 - (43%) Gaps:31/137 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PAAGLANCPPGCQCD-----DNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSIQFYA 82
            |:|  :.||.||.|.     .:.|.|.|...:|..:|..:.|..|                    
Zfish    29 PSA--STCPKGCTCQRSESPPHGLNVTCSLSRLKEIPPDVPPDTQ-------------------- 71

  Fly    83 ELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGL-SAVTVLNLRGNQISELH 146
               .|.|..||:..:|.|.|...:.|:.::|:||.:..:....|||| .::.||:|..|:|:.:|
Zfish    72 ---LLQLDRNHISLVPDRIFHGLRMLRRLNLSHNAVETLGEGAFIGLEGSLEVLDLSYNRITSVH 133

  Fly   147 QGTFTPL 153
            :..|..|
Zfish   134 KDAFARL 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 1/17 (6%)
LRR_8 83..142 CDD:290566 19/59 (32%)
leucine-rich repeat 84..107 CDD:275380 7/22 (32%)
leucine-rich repeat 108..131 CDD:275380 8/23 (35%)
LRR_RI 129..421 CDD:238064 9/26 (35%)
LRR_8 132..190 CDD:290566 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380
leucine-rich repeat 180..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..308 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
leucine-rich repeat 301..322 CDD:275380
LRR_8 325..384 CDD:290566
leucine-rich repeat 326..350 CDD:275380
leucine-rich repeat 351..373 CDD:275380
lrrc3bNP_001082985.1 LRRNT 34..72 CDD:214470 12/60 (20%)
LRR 1 69..90 8/43 (19%)
leucine-rich repeat 70..93 CDD:275378 8/45 (18%)
LRR_8 73..129 CDD:290566 19/55 (35%)
LRR 2 93..114 5/20 (25%)
LRR_4 94..132 CDD:289563 13/37 (35%)
leucine-rich repeat 94..118 CDD:275378 8/23 (35%)
LRR 3 118..139 7/20 (35%)
leucine-rich repeat 119..142 CDD:275378 8/22 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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