DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and vasnb

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001104232.1 Gene:vasnb / 100004428 ZFINID:ZDB-GENE-110714-1 Length:668 Species:Danio rerio


Alignment Length:731 Identity:153/731 - (20%)
Similarity:240/731 - (32%) Gaps:218/731 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PAAGLAN-CPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTI-DSSIQFYAELT 85
            |:..||: ||..|.|.....:. |...:...:|..:..:::.|.:..|.|::: .........|.
Zfish    18 PSPVLADTCPDNCTCQVQDSIF-CFSRKDTKMPSEVPTTVKNLYVFKNGIESLSQEDFVHLGSLE 81

  Fly    86 FLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTF 150
            .||||.|.|..:|...|.....|..:.|:.|:|..||..:|.||..:..|.|..|.|..:|    
Zfish    82 MLDLSQNQLTELPDHVFEPLSSLNNLDLSANQIVHISKYSFAGLELLERLYLYSNLIESIH---- 142

  Fly   151 TPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTL 215
                                |.|||||.:|..|.|..|.|..:|    ...||.|..|.|..|::
Zfish   143 --------------------PAAFDGLHELLELKLQGNKLKILP----ALKMPHLLLLDLRFNSI 183

  Fly   216 QSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQL 280
            .|...:..|..| |..|:|.|..|..::.:.....:.|..||:|:|:|...|.| |.:...|..|
Zfish   184 PSPGPNDLQTPK-LESLKLGGLGLSTLNEELLGSFKNLHELDISNNQLTAFPVV-LREAKGLVSL 246

  Fly   281 SLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGAL 345
            .|..|....::...|..|.:|..|:::                      |||            |
Zfish   247 VLAGNPMGPLNWEDFEKLTELHELDIS----------------------NLS------------L 277

  Fly   346 SGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCRVMWLHNLLVAKNASQDDVSEL 410
            .||.:            :||: |.|  .|:.|.::|||.:|.|.:.|..:.|..|........|.
Zfish   278 QGLPE------------TLAQ-LLP--HLKRLTVAENPFNCLCNLAWFPSWLRTKQIQLGRTEET 327

  Fly   411 LCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVGSAATITALALVLYRCRHKI------ 469
            .|.||....|:.|..|.....||...     ..|...:|.|.|...|....:....|.|      
Zfish   328 RCHFPPLNSGKVLERLGHREFGCPIT-----TTITTRMVKSTAVPPAPFTSVPSTTHAILPPKPS 387

  Fly   470 ------------------------RET-------IKGG-LW-------------GNSALGRKERE 489
                                    |.|       :.|| .|             |.|.       
Zfish   388 NNPSTDIDYDPAPPTPSTSIDPDLRSTFCPSNICLNGGTCWLDNEGHVECICVPGTSG------- 445

  Fly   490 YQKTFCDED--------------------------YMSRHQH---HPCSLGIHSTF--------- 516
               |:|:::                          ::...::   .|...|:..|:         
Zfish   446 ---TYCEKEEDPLLFPTEITSEPEIIAKKVTSSSIHLDLRRYIDMRPNIRGVKLTYRNLSGQDKR 507

  Fly   517 PNTYTAPHH----------PGATHHYGMCPMPVNDLGAID----PQQKFQQLVVPTATMISEKKL 567
            |...:.||:          |.:|  |.:|..|:.:.|.::    ..|.....:.||...:.:.||
Zfish   508 PKQLSVPHYYDEYILRGLQPNST--YSVCASPLGEAGNVNRVCTEAQTVSLQIPPTGARLEDPKL 570

  Fly   568 NNN-------KALVSQGAIDDSASFVLHMKSATMGRDVHQQNPQLNHY--------TKPQFLSAT 617
            ...       ..|:...|:....:..:|.|.:....|:.....||...        .|.:.::..
Zfish   571 TTMLIPALAILLLLVLVAVAVGVACYMHKKKSKGHLDLECDPSQLELEGLDNGALPQKKEIIACP 635

  Fly   618 ATVGDSCYSYADVPMV 633
            :||.:....|. ||::
Zfish   636 STVQNGGLDYR-VPLM 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 3/18 (17%)
LRR_8 83..142 CDD:290566 21/58 (36%)
leucine-rich repeat 84..107 CDD:275380 9/22 (41%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
LRR_RI 129..421 CDD:238064 73/291 (25%)
LRR_8 132..190 CDD:290566 15/57 (26%)
leucine-rich repeat 132..155 CDD:275380 5/22 (23%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..204 CDD:275380 7/23 (30%)
LRR_8 203..263 CDD:290566 18/59 (31%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
LRR_8 252..308 CDD:290566 17/55 (31%)
leucine-rich repeat 253..276 CDD:275380 9/22 (41%)
leucine-rich repeat 277..300 CDD:275380 6/22 (27%)
leucine-rich repeat 301..322 CDD:275380 2/20 (10%)
LRR_8 325..384 CDD:290566 14/58 (24%)
leucine-rich repeat 326..350 CDD:275380 6/23 (26%)
leucine-rich repeat 351..373 CDD:275380 4/21 (19%)
vasnbNP_001104232.1 LRR_RI <51..181 CDD:238064 43/157 (27%)
LRR_8 54..114 CDD:290566 15/59 (25%)
leucine-rich repeat 56..79 CDD:275380 3/22 (14%)
LRR_4 79..118 CDD:289563 13/38 (34%)
leucine-rich repeat 80..103 CDD:275380 9/22 (41%)
leucine-rich repeat 104..151 CDD:275380 20/70 (29%)
leucine-rich repeat 152..172 CDD:275380 7/23 (30%)
leucine-rich repeat 173..195 CDD:275380 6/21 (29%)
leucine-rich repeat 196..219 CDD:275380 5/22 (23%)
leucine-rich repeat 220..242 CDD:275380 9/22 (41%)
leucine-rich repeat 243..266 CDD:275380 6/22 (27%)
leucine-rich repeat 267..290 CDD:275380 12/71 (17%)
LRRCT 299..351 CDD:214507 15/51 (29%)
EGF_CA 417..449 CDD:238011 6/41 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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