DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS4 and RPS4A

DIOPT Version :9

Sequence 1:NP_001287055.1 Gene:RpS4 / 39484 FlyBaseID:FBgn0011284 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_012679.3 Gene:RPS4A / 853610 SGDID:S000003906 Length:261 Species:Saccharomyces cerevisiae


Alignment Length:257 Identity:194/257 - (75%)
Similarity:222/257 - (86%) Gaps:0/257 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIV 65
            |||||||||||||||..|:||||.|.:|||||.|||||||||||::||||||||||||.||..|:
Yeast     1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAIL 65

  Fly    66 MQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130
            |||.||||||||||.|||||:||||||:.|.|.|||||||||||.:|||:.|||.|||.||||.|
Yeast    66 MQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQ 130

  Fly   131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195
            ||.||||::|||||||||||||.|..||:|::|:|||||||:||||:|.|..:||||||||:||:
Yeast   131 LGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTI 195

  Fly   196 VNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLA 257
            |::|||.|.||:||||||..:.|.|||.|||:||:..|||||||||||:|||||||||:|.|
Yeast   196 VHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRA 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS4NP_001287055.1 PLN00036 1..258 CDD:177670 194/257 (75%)
RPS4ANP_012679.3 PLN00036 1..259 CDD:177670 194/257 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342002
Domainoid 1 1.000 119 1.000 Domainoid score I1268
eggNOG 1 0.900 - - E1_COG1471
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H90857
Inparanoid 1 1.050 405 1.000 Inparanoid score I310
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62198
OrthoFinder 1 1.000 - - FOG0001491
OrthoInspector 1 1.000 - - otm46698
orthoMCL 1 0.900 - - OOG6_100732
Panther 1 1.100 - - LDO PTHR11581
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1247
SonicParanoid 1 1.000 - - X948
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.