DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS4 and rps4x

DIOPT Version :9

Sequence 1:NP_001287055.1 Gene:RpS4 / 39484 FlyBaseID:FBgn0011284 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001005589.1 Gene:rps4x / 449547 ZFINID:ZDB-GENE-040927-19 Length:263 Species:Danio rerio


Alignment Length:259 Identity:194/259 - (74%)
Similarity:233/259 - (89%) Gaps:0/259 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIV 65
            |||||||||||:||||.||||||.||||||||||||||||.|||:|||||||||||.|.||.||.
Zfish     1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIC 65

  Fly    66 MQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130
            |||.:|:|||||||.|||.|:|||:::|||||.|||:|||||||.:|||:.||||||||||:|..
Zfish    66 MQRFIKIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKIL 130

  Fly   131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195
            :|.||:|.|||||.||||||||||..||::::|:.:|||||:|||::||:||:|||.||||:|.:
Zfish   131 IGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVI 195

  Fly   196 VNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
            .|||:||||||:||:|||.|:.|||||:|:|:|||||||::|||:||||:|:||||||||||||
Zfish   196 TNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKRLAAK 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS4NP_001287055.1 PLN00036 1..258 CDD:177670 191/256 (75%)
rps4xNP_001005589.1 PLN00036 1..260 CDD:177670 194/259 (75%)
RS4NT 3..39 CDD:285333 32/35 (91%)
Ribosomal_S4e 95..169 CDD:279271 50/73 (68%)
KOW_RPS4 175..229 CDD:240511 35/53 (66%)
40S_S4_C 212..259 CDD:292739 35/46 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576014
Domainoid 1 1.000 119 1.000 Domainoid score I5786
eggNOG 1 0.900 - - E1_COG1471
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H90857
Inparanoid 1 1.050 426 1.000 Inparanoid score I1731
OMA 1 1.010 - - QHG62198
OrthoDB 1 1.010 - - D1065966at2759
OrthoFinder 1 1.000 - - FOG0001491
OrthoInspector 1 1.000 - - oto40479
orthoMCL 1 0.900 - - OOG6_100732
Panther 1 1.100 - - LDO PTHR11581
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1247
SonicParanoid 1 1.000 - - X948
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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