DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS12 and RPL8A

DIOPT Version :9

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_011830.1 Gene:RPL8A / 856352 SGDID:S000001025 Length:256 Species:Saccharomyces cerevisiae


Alignment Length:121 Identity:23/121 - (19%)
Similarity:44/121 - (36%) Gaps:31/121 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VDVDVPSAAPVLDGAMDINTALQ-----------------EVLKK--SLIADG------------ 37
            :.:.||.........:|.|||.:                 |.|.|  :.:|:|            
Yeast    67 IRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYA 131

  Fly    38 LVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
            :.:|::.....::.::|.|.::|...|.......:.|||.:..:|...|....:||
Yeast   132 VKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:396000 19/102 (19%)
RPL8ANP_011830.1 PTZ00365 2..251 CDD:240382 23/121 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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