DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS12 and AT4G22380

DIOPT Version :9

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_193969.1 Gene:AT4G22380 / 828333 AraportID:AT4G22380 Length:128 Species:Arabidopsis thaliana


Alignment Length:128 Identity:27/128 - (21%)
Similarity:51/128 - (39%) Gaps:15/128 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVT 73
            |.|.|:.|..:.|  .:.::::::.....|..|.::|.|.|::..:...::|...:.......:.
plant     8 PKAYPLADSQLSI--TIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLP 70

  Fly    74 ALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136
            .|..:..:|.:.|.|.:.||...|:        .|.|..|||.     ..|...|.....||:
plant    71 LLAEDKNVPYVFVPSKQALGRACGV--------TRPVIACSVT-----SNEASQLKSQIQHLK 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:396000 18/94 (19%)
AT4G22380NP_193969.1 SNU13 7..128 CDD:411046 27/128 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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