DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS12 and AT4G22380

DIOPT Version :10

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_193969.1 Gene:AT4G22380 / 828333 AraportID:AT4G22380 Length:128 Species:Arabidopsis thaliana


Alignment Length:128 Identity:27/128 - (21%)
Similarity:51/128 - (39%) Gaps:15/128 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVT 73
            |.|.|:.|..:.|  .:.::::::.....|..|.::|.|.|::..:...::|...:.......:.
plant     8 PKAYPLADSQLSI--TIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLP 70

  Fly    74 ALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136
            .|..:..:|.:.|.|.:.||...|:        .|.|..|||.     ..|...|.....||:
plant    71 LLAEDKNVPYVFVPSKQALGRACGV--------TRPVIACSVT-----SNEASQLKSQIQHLK 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:426153 18/94 (19%)
AT4G22380NP_193969.1 SNU13 7..128 CDD:411046 27/128 (21%)

Return to query results.
Submit another query.