DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS12 and AT4G12600

DIOPT Version :9

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_001190705.1 Gene:AT4G12600 / 826873 AraportID:AT4G12600 Length:183 Species:Arabidopsis thaliana


Alignment Length:96 Identity:22/96 - (22%)
Similarity:34/96 - (35%) Gaps:23/96 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEG 105
            |......:.||:..:..:|..||:       :..:.|   :|.:.|.|.:.||.   .|.:    
plant   103 GFTWVSSSYDKKIRLYWLLDSSFE-------IVIVDN---VPYVFVPSKQALGR---ACDV---- 150

  Fly   106 KPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136
             .|.|..|||.     ..|...|.....||:
plant   151 -TRPVIACSVT-----SNEASQLKSQIQHLK 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:396000 18/76 (24%)
AT4G12600NP_001190705.1 Ribosomal_L7Ae 22..166 CDD:279573 19/85 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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