DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS12 and Gadd45

DIOPT Version :9

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_610264.1 Gene:Gadd45 / 35646 FlyBaseID:FBgn0033153 Length:163 Species:Drosophila melanogaster


Alignment Length:114 Identity:27/114 - (23%)
Similarity:52/114 - (45%) Gaps:18/114 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DVDVDVPSA---APVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFD 64
            |:::::..|   ||:   ...|.:||.....::.:..||...|:...|:  ...::.|::|:..|
  Fly    17 DLELEIDMAMECAPI---GRTIKSALLRAQSEARVIVGLSAAINVLSKS--PEGSLFCLMAQPKD 76

  Fly    65 EPN----YKKLVTALCNEHQIPLIRVDSHKKLGEWSG------LCKIDK 103
            ..:    ::.|:.|.|.|:.|.:|:||...||....|      .|.:.|
  Fly    77 GDSATHMHEVLLEAFCYENDIYVIKVDDATKLSRILGQDSVESCCLVQK 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:396000 22/91 (24%)
Gadd45NP_610264.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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