DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS12 and RGD1561102

DIOPT Version :9

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_001100247.1 Gene:RGD1561102 / 299713 RGDID:1561102 Length:132 Species:Rattus norvegicus


Alignment Length:136 Identity:82/136 - (60%)
Similarity:104/136 - (76%) Gaps:7/136 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADVDVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDE 65
            ||..|    :||.|:   ||:|||||||||.:|:.|||..|||:|.|||.||||.||:||.:.|:
  Rat     1 MAKED----TAAGVI---MDVNTALQEVLKTALVHDGLARGIHEAAKALGKRQAHLCVLAANCDK 58

  Fly    66 PNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDV 130
            |.|.|||..||.||||.||:||.:||||||.||||||::||||||.|||.||:||:|:|:.|.||
  Rat    59 PMYIKLVETLCAEHQINLIKVDDNKKLGEWVGLCKIDRKGKPRKVIGCSCVVVKDYGQESQAKDV 123

  Fly   131 VKDHLR 136
            ::::.:
  Rat   124 IEEYFK 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:396000 65/94 (69%)
RGD1561102NP_001100247.1 Ribosomal_L7Ae 16..111 CDD:279573 65/94 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353102
Domainoid 1 1.000 137 1.000 Domainoid score I4755
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 168 1.000 Inparanoid score I4062
OMA 1 1.010 - - QHG54130
OrthoDB 1 1.010 - - D1474866at2759
OrthoFinder 1 1.000 - - FOG0001708
OrthoInspector 1 1.000 - - otm45902
orthoMCL 1 0.900 - - OOG6_101261
Panther 1 1.100 - - O PTHR11843
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1102
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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