DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS12 and Rpp38

DIOPT Version :9

Sequence 1:NP_729866.1 Gene:RpS12 / 39480 FlyBaseID:FBgn0286213 Length:139 Species:Drosophila melanogaster
Sequence 2:NP_001028235.1 Gene:Rpp38 / 291317 RGDID:1307474 Length:272 Species:Rattus norvegicus


Alignment Length:99 Identity:19/99 - (19%)
Similarity:38/99 - (38%) Gaps:23/99 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 LVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKID 102
            |..|:::..:||::.:.:|.::.        |.:..|:...|.|.|       .|......|::.
  Rat   102 LAIGVNEVTRALERNELLLVLVC--------KSVKPAIITSHLIQL-------SLSRTVPACQVP 151

  Fly   103 K-EGKPRKVCGCSVVV-------IKDFGEETPAL 128
            : ..:...|.|...|:       ..||.:|..|:
  Rat   152 QLSERIAPVIGLKCVLALGFRKNTMDFADEVEAI 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS12NP_729866.1 Ribosomal_L7Ae 23..118 CDD:396000 15/87 (17%)
Rpp38NP_001028235.1 Ribosomal_L7Ae 100..174 CDD:279573 15/86 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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