DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpL20 and mrpl20

DIOPT Version :10

Sequence 1:NP_524051.1 Gene:mRpL20 / 39477 FlyBaseID:FBgn0036335 Length:150 Species:Drosophila melanogaster
Sequence 2:NP_001090877.1 Gene:mrpl20 / 100038303 XenbaseID:XB-GENE-5819952 Length:149 Species:Xenopus tropicalis


Alignment Length:123 Identity:51/123 - (41%)
Similarity:79/123 - (64%) Gaps:0/123 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVFLNLPLLVRSRGPDEFWRKRRIFKLAAHYRSRTRNVYSFAIRSVHRALAYATKGRKLKKLDMA 65
            ||||:|...|||||||.:||.:.:.|.|.|:|.|....:|.|:|:|.||..|:||.||.||..|.
 Frog     1 MVFLSLSRWVRSRGPDRYWRVQEVLKHARHFRGRKNRCFSLAVRAVRRAFVYSTKARKAKKRIMR 65

  Fly    66 QLWSTRVEAGCQQYGVGLETFKEGLARSDILLNKKVLSDLAIWEPRSFEALVKISRER 123
            .||.:|:....:::|:........|.:..:.||:||:||:||:||::|::|..:::.|
 Frog    66 ALWVSRIAGATREHGMKYPMLMCNLVKCQVALNRKVISDMAIYEPKTFKSLAALAKRR 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL20NP_524051.1 Ribosomal_L20 13..113 CDD:459817 40/99 (40%)
mrpl20NP_001090877.1 Ribosomal_L20 13..118 CDD:197305 42/104 (40%)

Return to query results.
Submit another query.