DRSC/TRiP Functional Genomics Resources

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Protein Alignment MICAL-like and Smtnl1

DIOPT Version :9

Sequence 1:NP_648621.1 Gene:MICAL-like / 39475 FlyBaseID:FBgn0036333 Length:1010 Species:Drosophila melanogaster
Sequence 2:NP_001178668.1 Gene:Smtnl1 / 311167 RGDID:1311701 Length:470 Species:Rattus norvegicus


Alignment Length:110 Identity:44/110 - (40%)
Similarity:61/110 - (55%) Gaps:0/110 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GTKVGTGTKALEYWCRVVTQGYNGVKVENMTTSWRNGLAFCAIIHHFRPDLIDFDRLKADDIYEN 70
            |..:|.....|..|||.:|:.|..|.::|.::||.:|:||||:||.|.||..|:..|.......|
  Rat   350 GAAIGGVKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPDAFDYAELDPTKRRHN 414

  Fly    71 NDLAFTTAEKYLGIPALLDAADMVSYEVPDRLSILTYLSQFYKVL 115
            ..|||:||||......||:..|||...|||...:.||:.:.|:.|
  Rat   415 FTLAFSTAEKLADCAQLLEVDDMVRLAVPDSKCVYTYIQELYRSL 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MICAL-likeNP_648621.1 CH 14..111 CDD:278723 40/96 (42%)
LIM_like_1 146..207 CDD:188784
DUF3585 778..933 CDD:288945
Smtnl1NP_001178668.1 CH 357..457 CDD:237981 40/99 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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