DRSC/TRiP Functional Genomics Resources

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Protein Alignment MICAL-like and Smtn

DIOPT Version :10

Sequence 1:NP_648621.1 Gene:MICAL-like / 39475 FlyBaseID:FBgn0036333 Length:1010 Species:Drosophila melanogaster
Sequence 2:XP_008768481.1 Gene:Smtn / 289734 RGDID:1310216 Length:954 Species:Rattus norvegicus


Alignment Length:98 Identity:34/98 - (34%)
Similarity:60/98 - (61%) Gaps:1/98 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 WCRVVTQGYNGVKVENMTTSWRNGLAFCAIIHHFRPDLIDFDRLKADDIYENNDLAFTTAEKYLG 83
            |||..|:||..|.::|.::||.:|:||||::|:|.|:..|:.:|...:..:|.::||::||..:.
  Rat   845 WCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVD 909

  Fly    84 IPALLDAAD-MVSYEVPDRLSILTYLSQFYKVL 115
            ...|::..| |:..:.||...:.||:...|..|
  Rat   910 CVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHL 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MICAL-likeNP_648621.1 CH_MICALL2 11..115 CDD:409102 33/96 (34%)
LIM_like_1 146..207 CDD:188784
PTZ00449 <411..727 CDD:185628
bMERB_dom 785..933 CDD:463467
SmtnXP_008768481.1 Smoothelin 1..41 CDD:463614
Smoothelin 73..122 CDD:463614
PHA03247 <173..455 CDD:223021
Smoothelin 604..651 CDD:463614
CH_SMTNA 837..947 CDD:409107 34/98 (35%)
Blue background indicates that the domain is not in the aligned region.

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