DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MICAL-like and Actn3

DIOPT Version :10

Sequence 1:NP_648621.1 Gene:MICAL-like / 39475 FlyBaseID:FBgn0036333 Length:1010 Species:Drosophila melanogaster
Sequence 2:NP_596915.1 Gene:Actn3 / 171009 RGDID:621792 Length:900 Species:Rattus norvegicus


Alignment Length:133 Identity:57/133 - (42%)
Similarity:74/133 - (55%) Gaps:13/133 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KALEYWCRVVTQGYNGVKVENMTTSWRNGLAFCAIIHHFRPDLIDFDRLKADDIYENNDLAFTTA 78
            :.|..||:..|..|..|.|:|..|||::|||.||:||..||||||:.:|:.||...|.:.||..|
  Rat   161 EGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVA 225

  Fly    79 EKYLGIPALLDAADMVSYEVPDRLSILTYLSQFYKVLG-------------KSLKHPKPEEPLGE 130
            ||||.||.:|||.|:|:...||..:|:||:|.||....             |.|...:..|.|.|
  Rat   226 EKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENEKLME 290

  Fly   131 ESE 133
            |.|
  Rat   291 EYE 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MICAL-likeNP_648621.1 CH_MICALL2 11..115 CDD:409102 50/100 (50%)
LIM_like_1 146..207 CDD:188784
PTZ00449 <411..727 CDD:185628
bMERB_dom 785..933 CDD:463467
Actn3NP_596915.1 CH_ACTN_rpt1 41..145 CDD:409063
CH_ACTN_rpt2 149..263 CDD:409065 50/101 (50%)
SPEC 290..513 CDD:238103 3/4 (75%)
SPEC 408..635 CDD:238103
SPEC 526..746 CDD:238103
PTZ00184 753..>857 CDD:185504
EFhand_Ca_insen 830..896 CDD:430177
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.