DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul6 and AT1G43140

DIOPT Version :9

Sequence 1:NP_648620.1 Gene:Cul6 / 39474 FlyBaseID:FBgn0036332 Length:670 Species:Drosophila melanogaster
Sequence 2:NP_175007.2 Gene:AT1G43140 / 3767291 AraportID:AT1G43140 Length:721 Species:Arabidopsis thaliana


Alignment Length:758 Identity:171/758 - (22%)
Similarity:309/758 - (40%) Gaps:180/758 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VNQIFDDYTS--FDGQKLMHLYHLIYKQCAAERNWNNPAQKNGRSLYIVLSDCLMKRLKNIA--W 85
            :.:|.:|.:.  ||..:.::||.:||..|..:     |.....:.||        .:.:.:.  :
plant    31 LQRILEDLSEPPFDPGQYINLYTIIYDMCLQQ-----PPNDYSQELY--------NKYRGVVDHY 82

  Fly    86 VMENQLDDNKPIR---LIAKYLEHWVPYQRSCEKLNLACYHFNRNWVERERLKGDKETYPIYRLA 147
            ..|..|...:...   ::.:.::.|..::.....|:..|::.:|.:|.|..|.      .:..:.
plant    83 NKETVLPSMRERHGEYMLRELVKRWANHKILVRWLSRFCFYLDRFYVARRGLP------TLNDVG 141

  Fly   148 MISWKELVFEPSVTILAAIRLILSQMPRE--------------------------YNKSLEYQVY 186
            ..|:.:||::...:....:.|.|....||                          |.:..|..:.
plant   142 FTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKNVIDVYCGNGVGQMVIYEEDFESFLL 206

  Fly   187 QVLQSIVELYANDKYQDVSLPS---------RIDKIFTEKVMDFYKSTT----LHEFQK---IVV 235
            |...|.....|:...|:.|.|.         :::|   |:|.::..|||    :.:.|.   :||
plant   207 QDTASYYSRKASRWSQEDSCPDYMLKAEECLKLEK---ERVTNYLHSTTEPKLVEKVQNELLVVV 268

  Fly   236 SNDYKDFKHFLRYACLAMPE----------------IENGTQ-----FK--------AILKRYL- 270
            :....:.:|   ..|||:..                |..|.:     ||        |::|:.. 
plant   269 AKQLIENEH---SGCLALLRDDKMGDLSRMYRLYRLIPQGLEPIADLFKQHVTAEGNALIKQAAD 330

  Fly   271 AARLQETRLSG---------KDYIQAFLGLCRGPLQRALRDHTKLAEVVDAVCKEEINRKGQIID 326
            ||..|:...|.         .|....::..|   .|:....|..|.|..:..|.:.:.....   
plant   331 AATNQDASASQVLVRKEIELHDKYMVYVDEC---FQKHSLFHKLLKEAFEVFCNKTVAGASS--- 389

  Fly   327 PTRLLVTYANELMTKRQESEEAIIDE-----LKRIVKCVEFLSDEYKFIDMYLKALRIRQINETS 386
             ..:|.||.:.::..|..||: :.||     |:::|..:.::||:..|.:.|.|....|.:.:.|
plant   390 -AEILATYCDNILKTRGGSEK-LSDEATEITLEKVVNLLVYISDKDLFAEFYRKKQARRLLFDRS 452

  Fly   387 TSDGVESIMYSLLNKKMANFVTRCIYVQLRDVDKLRTLKKEFQDHLNSK-GIKLGFDFRPKCFKN 450
            .                       |..::.|:...|.|:..|.|:|::. ..|||.||.......
plant   453 G-----------------------IMKEVTDITLARELQTNFVDYLSANMTTKLGIDFTVTVLTT 494

  Fly   451 D--GSFENFNLTLPDELQQAWKEFRIFYEARKLQSKAIIQLNNELSSGEITCHL----NQSVYIL 509
            .  .|::..:|.||.|:....:.|::|| ..|..|:   :|:...|.|  |||:    .:....|
plant   495 GFWPSYKTTDLNLPTEMVNCVEAFKVFY-GTKTNSR---RLSWIYSLG--TCHILGKFEKKTMEL 553

  Fly   510 EVSTLQMAVLMLFNRHERFTEQELVTALGV---ELETLQEALKQIKFLVYIE------VNKVNYI 565
            .|||.|.|||:|||..||.:..|:...|.:   :|..|..:|..:|:.:.|:      ::|.:..
plant   554 VVSTYQAAVLLLFNNAERLSYTEISEQLNLSHEDLVRLLHSLSCLKYKILIKEPMSRTISKTDTF 618

  Fly   566 EINMDFTNRKRRLFCNEPLPRKMRKIEEKSEIELKIRRDKQ--VDAAIVRIMKGQKQLEYSELIS 628
            |.|..||::.|::  ..|||    .::|:.::...:.:|::  :|||:|||||.:|.|.:.:|:|
plant   619 EFNSKFTDKMRKI--RVPLP----PMDERKKVVEDVDKDRRYAIDAALVRIMKSRKVLAHQQLVS 677

  Fly   629 LVYEELKDRVKPQVSFIKKRLDYLVEREYLERD-NYYNIYRYL 670
            ...|.|....||.:..||||::.|:.|:||||| ...|.::|:
plant   678 ECVEHLSKMFKPDIKMIKKRIEDLINRDYLERDTENANTFKYV 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul6NP_648620.1 COG5647 25..670 CDD:227934 170/756 (22%)
CULLIN 362..500 CDD:214545 32/140 (23%)
Cullin_Nedd8 606..661 CDD:287520 25/56 (45%)
AT1G43140NP_175007.2 Cullin 48..623 CDD:279260 130/636 (20%)
CULLIN 428..546 CDD:214545 35/146 (24%)
Cullin_Nedd8 653..713 CDD:287520 27/59 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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