DRSC/TRiP Functional Genomics Resources

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Protein Alignment ndufs3 and ND-30

DIOPT Version :9

Sequence 1:NP_001003921.1 Gene:ndufs3 / 394690 XenbaseID:XB-GENE-997488 Length:250 Species:Xenopus tropicalis
Sequence 2:NP_647775.1 Gene:ND-30 / 38378 FlyBaseID:FBgn0266582 Length:265 Species:Drosophila melanogaster


Alignment Length:262 Identity:157/262 - (59%)
Similarity:190/262 - (72%) Gaps:20/262 - (7%)


- Green bases have known domain annotations that are detailed below.


 Frog     1 MLAGVR--AARGLIRGACAFRSLP-----QVRLEGTT-----TETRPTVRPQDKVQLNQLSAFGE 53
            |.|.:|  .||..:....|...:|     .:|:..||     ...:||||..|.|..:.||.||.
  Fly     1 MAALIRNLGARAAVAALSAKHVVPAAGSTALRMASTTPVEPKKADKPTVRQPDAVARSHLSDFGR 65

 Frog    54 YVAEILPKYVQQVQVTCNGELEVMVHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPAKTNRFEI 118
            ||||.||||||:||:|...||||::.|:||:|||.||:||..|||.:|.|:..||||.:.||||:
  Fly    66 YVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGVDVPCRKNRFEV 130

 Frog   119 VYNLLSLRFNTRMRVMTYTDELTPVESAVPVFEAANWYEREVWDMYGVFFANHPDLRRILTDYGF 183
            ||||||||:|:|:||.||||||||::||..|.:||||||||:|||||||||||||||||||||||
  Fly   131 VYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVFFANHPDLRRILTDYGF 195

 Frog   184 EGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVQLSQEFRKFDLSSPWEAFPAHRQ--------QPE 240
            ||||.|:|||||||||:|||||.||||.||::|:|||||||||:|||.||..|.        .|:
  Fly   196 EGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNANPPAEVVPPQ 260

 Frog   241 SP 242
            :|
  Fly   261 AP 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ndufs3NP_001003921.1 PRK06074 48..230 CDD:235691 134/181 (74%)
ND-30NP_647775.1 PRK06074 60..242 CDD:235691 134/181 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 201 1.000 Domainoid score I2964
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H3346
Inparanoid 1 1.050 313 1.000 Inparanoid score I2536
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276923at2759
OrthoFinder 1 1.000 - - FOG0005716
OrthoInspector 1 1.000 - - oto104811
Panther 1 1.100 - - LDO PTHR10884
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4118
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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