DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10748 and MDH3

DIOPT Version :9

Sequence 1:NP_648615.1 Gene:CG10748 / 39469 FlyBaseID:FBgn0036327 Length:349 Species:Drosophila melanogaster
Sequence 2:NP_010205.1 Gene:MDH3 / 851481 SGDID:S000002236 Length:343 Species:Saccharomyces cerevisiae


Alignment Length:346 Identity:123/346 - (35%)
Similarity:184/346 - (53%) Gaps:48/346 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LKVAVVGAGGGIGQPLSLLLRRCPGIDELALHDLSEMKGIATDLSHISQTGKVIGFTGEKELESA 87
            :|||::||.||:||||||||:..|.:.||||:|:...:||..|||||:.....:|: .:..:|:.
Yeast     2 VKVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENT 65

  Fly    88 VSGADVVVVAAGMPRLPGMQRDHLMAANGNVAVKVATAISNASPRAHLAFITNPVNMIVPAAAEV 152
            :|.|.||::.||:||.||:.||.|...|..:...:.||:...:|.|.:..|:||||.:||.|.|.
Yeast    66 LSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVISNPVNSLVPIAVET 130

  Fly   153 LMAHGTFDSRRLFGITTLDVVRSKKFIGDSMNISPDDV-----------NIPVIGGHAGITILPL 206
            |...|.|....:.|:|.||:||::.|:.|.:.:....:           .:.|||||:|.||:|:
Yeast   131 LKKMGKFKPGNVMGVTNLDLVRAETFLVDYLMLKNPKIGQEQDKTTMHRKVTVIGGHSGETIIPI 195

  Fly   207 ISQCQPIYRCDLQEIQNLTHRIQEAGTEVVNAKAGKGSATLSMAYAGATFVNSLLRGIAGQDGLI 271
            |:....:::.| ::.::..||:|..|.|:|.||.|.||||||||:|||.|...:||....:....
Yeast   196 ITDKSLVFQLD-KQYEHFIHRVQFGGDEIVKAKQGAGSATLSMAFAGAKFAEEVLRSFHNEKPET 259

  Fly   272 E--CAFVASKLTDAPFFASPLELGK-------DGIKRYIPLP------QMSDYEKEALEKLLP-- 319
            |  .|||         :...|:.||       |....|..||      .:...:...||||.|  
Yeast   260 ESLSAFV---------YLPGLKNGKKAQQLVGDNSIEYFSLPIVLRNGSVVSIDTSVLEKLSPRE 315

  Fly   320 ---------ILRQNADEGVNF 331
                     .||:|.::|.:|
Yeast   316 EQLVNTAVKELRKNIEKGKSF 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10748NP_648615.1 MDH_euk_gproteo 36..333 CDD:130833 115/333 (35%)
MDH_glyoxysomal_mitochondrial 36..332 CDD:133422 115/333 (35%)
MDH3NP_010205.1 MDH_euk_gproteo 3..339 CDD:130833 123/345 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11540
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1106
TreeFam 1 0.960 - -
54.870

Return to query results.
Submit another query.