DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10748 and c-NAD-MDH3

DIOPT Version :10

Sequence 1:NP_648615.1 Gene:CG10748 / 39469 FlyBaseID:FBgn0036327 Length:349 Species:Drosophila melanogaster
Sequence 2:NP_200483.2 Gene:c-NAD-MDH3 / 835773 AraportID:AT5G56720 Length:372 Species:Arabidopsis thaliana


Alignment Length:267 Identity:56/267 - (20%)
Similarity:107/267 - (40%) Gaps:37/267 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LKVAVVGAGGGIGQPLSLLLRRCPGI-----DELALHDL------SEMKGIATDLSHISQTGKVI 76
            ::|.:.||.|.||..::.::.|  ||     ..:.||.|      |.::.:..:|.. |....:.
plant    45 IRVLITGAAGNIGYAIAPMIAR--GIMLGPDQPMILHLLDIEPASSSLEAVKMELQD-SAFPLLK 106

  Fly    77 GFTGEKELESAVSGADVVVVAAGMPRLPGMQRDHLMAANGNVAVKVATAISN-ASPRAHLAFITN 140
            |......:..|....::|::..|.||:.||:|..:|:.|..:....|:|:.. ||....:..:.|
plant   107 GVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYASDDCKVLVVAN 171

  Fly   141 PVN---MIVPAAAEVLMAHGTFDSRRLFGITTLDVVRSKKFIGDSMNISPDDVNIPVIGGHAGIT 202
            |.|   :|:...|.      :.....:..:|.||..|:...:.|.:::....|...::.|:...|
plant   172 PANTNALILKEFAP------SIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNVIVWGNHSST 230

  Fly   203 ILPLISQCQPIYRCDLQEIQNLT--H---------RIQEAGTEVVNAKAGKGSATLSMAYAGATF 256
            ..|..:......:...:.::.|.  |         .:|:.|..|:.|:  |.|:..|.|.|....
plant   231 QYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAAVLRAR--KQSSAFSAAGAACDH 293

  Fly   257 VNSLLRG 263
            :.....|
plant   294 IRDWFLG 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10748NP_648615.1 MDH_glyoxysomal_mitochondrial 36..332 CDD:133422 50/254 (20%)
c-NAD-MDH3NP_200483.2 PLN00135 63..371 CDD:177744 50/249 (20%)

Return to query results.
Submit another query.