DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10748 and Ldhc

DIOPT Version :10

Sequence 1:NP_648615.1 Gene:CG10748 / 39469 FlyBaseID:FBgn0036327 Length:349 Species:Drosophila melanogaster
Sequence 2:XP_038965574.2 Gene:Ldhc / 29634 RGDID:69366 Length:346 Species:Rattus norvegicus


Alignment Length:334 Identity:85/334 - (25%)
Similarity:141/334 - (42%) Gaps:79/334 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KVAVVGAGG-GIGQPLSLLLRRCPGI-DELALHDLSE--MKGIATDLSHIS---QTGKVIGFTGE 81
            |:.|||.|. |:...:|:||:   |: |||||.|..|  :||.|.||.|.|   .|.|::  .|:
  Rat    36 KITVVGVGNVGMACAISILLK---GLADELALVDADENKLKGEALDLLHGSLFLSTPKIV--FGK 95

  Fly    82 KELESAVSGADVVVVAAGMPRLPGMQRDHLMAANGNVAVKVATAISNASPRAHLAFITNPVNMIV 146
            ....||  .:.:|::.||...:.|..|..|:..|..:...:...:...||...:..:||||::: 
  Rat    96 DYSVSA--NSKLVIITAGARMVSGESRLALLQRNVTIMKAIVPGVIQNSPDCKIMIVTNPVDIL- 157

  Fly   147 PAAAEVLMAHGTFDSRRLFGI---------TTLDVVRSKKFIGDSMNISPDDVNIPVIGGH---- 198
                       |:...::.|:         ..||..|.:..||:.:.::|...:..|:|.|    
  Rat   158 -----------TYVVWKISGLPVSSVIGSGCNLDSARFRYLIGEKLGVNPSSCHGWVLGEHGDSS 211

  Fly   199 ---------AGITILPLISQCQPIYRCDLQEIQ-NLTHR-IQEAGTEVVNAKAGKGSA-TLSMAY 251
                     ||:|:..|    .|....|..:.| ...|: :.:.|.||:|.|.....| .||:..
  Rat   212 VPIWSGVNIAGVTLKSL----NPAIGSDSDKEQWKTVHKQVVDGGYEVLNLKGYTSWAIALSVTD 272

  Fly   252 AGATF---------VNSLLRGIAGQDGLIECAFVASKLTDAPFFASPLELGKDGIKRYIPLPQMS 307
            ..|:.         |.:|::|:.|             :.:..|.:.|..||:.||...:.:..  
  Rat   273 IAASILKNLKRVHAVTTLVKGLYG-------------IKEEIFLSIPCVLGQSGITDLVKVNM-- 322

  Fly   308 DYEKEALEK 316
            :.|:|||.|
  Rat   323 NTEEEALFK 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10748NP_648615.1 MDH_glyoxysomal_mitochondrial 36..332 CDD:133422 79/321 (25%)
LdhcXP_038965574.2 None

Return to query results.
Submit another query.