DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spop and rdx

DIOPT Version :10

Sequence 1:NP_989003.1 Gene:spop / 394599 XenbaseID:XB-GENE-1003310 Length:374 Species:Xenopus tropicalis
Sequence 2:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster


Alignment Length:374 Identity:298/374 - (79%)
Similarity:337/374 - (90%) Gaps:2/374 - (0%)


- Green bases have known domain annotations that are detailed below.


 Frog     1 MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKL 65
            :|||||||.| |::: ||||:|||||:||||||||||||||||||||||||:||||||:||||||
  Fly   458 VSRVPSPPLP-EVNT-PVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKL 520

 Frog    66 KWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKD 130
            ||||||||||||||||||||||||||||.||||||||||||||||.|||||||||||||||||||
  Fly   521 KWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKD 585

 Frog   131 WGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWE 195
            |||||||||||||||||||||:||||:|||||||.||||||||:.:...|||||:|:::||.|::
  Fly   586 WGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD 650

 Frog   196 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYT 260
            |.:|:|..|.|.|:|||||||||||||.||:|||||||||.|.|||.|.||:.:|.|||:.||||
  Fly   651 NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYT 715

 Frog   261 GKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325
            |||.||:||||||||||||||||:||||||||||.|||||.|||.|||||||||||||.|.:|||
  Fly   716 GKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFI 780

 Frog   326 NYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS 374
            |.||:||||||||::|:.:|.||:|||:|:||:.|.|.:||||||:|.|
  Fly   781 NTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spopNP_989003.1 MATH_SPOP 28..166 CDD:239743 131/137 (96%)
Required for nuclear localization. /evidence=ECO:0000250 71..191 104/119 (87%)
BTB_POZ_SPOP-like 182..301 CDD:349588 87/118 (74%)
BACK_SPOP 297..367 CDD:350593 48/69 (70%)
Homodimerization. /evidence=ECO:0000250 297..355 42/57 (74%)
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 131/137 (96%)
BTB_POZ_roadkill-like 637..757 CDD:349654 88/119 (74%)
BACK_roadkill_like 752..825 CDD:350595 51/72 (71%)

Return to query results.
Submit another query.