DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10960 and INT4

DIOPT Version :9

Sequence 1:NP_648605.1 Gene:CG10960 / 39458 FlyBaseID:FBgn0036316 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_001328028.1 Gene:INT4 / 827346 AraportID:AT4G16480 Length:582 Species:Arabidopsis thaliana


Alignment Length:548 Identity:133/548 - (24%)
Similarity:234/548 - (42%) Gaps:119/548 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 YVAALAAAGGAFAAGTVLGWTSPAETEIVDRG-----EGYDFPVDKDQFSWVGS---AMTLGAAC 140
            |:..||.:.|  ..|.:.|:    :|.::...     |.:|   :.|:.:|:.|   :|.:..|.
plant    26 YIMRLALSAG--IGGLLFGY----DTGVISGALLFIKEDFD---EVDKKTWLQSTIVSMAVAGAI 81

  Fly   141 VCIPIGFLIN-MIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMYTG 204
            |...:|..|| ..||:.::|...:.|::|..::.:|....::...|..:|...|...:|:|:|..
plant    82 VGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYIS 146

  Fly   205 EIAQKEIRGTLGSFFQLMITIGILFVYAVGAGVKIF--------WLSIICGILPLIFGAIFFFMP 261
            |.:...|||.|.|...|:||.|..|.|.:...   |        |:..:.|:..::...:...:|
plant   147 EASPARIRGALVSTNGLLITGGQFFSYLINLA---FVHTPGTWRWMLGVAGVPAIVQFVLMLSLP 208

  Fly   262 ESPTYLVSKDRSENAIKSIQWLRGKEYDYEPELAELRETDRETKANK--------VNVWAALNRP 318
            |||.:|..|||...:...::.:...: :.|.|:..|:.:....||::        ..:..|...|
plant   209 ESPRWLYRKDRIAESRAILERIYPAD-EVEAEMEALKLSVEAEKADEAIIGDSFSAKLKGAFGNP 272

  Fly   319 VTRKALAISMGLMFFQQVCGINAVIFYASRI--FLEANTGIEAEWATILIGIMQVVATFVSTLVV 381
            |.|:.||..:.:...||..|||.|::|:..|  |....:...|...:::...:..:.:.||.:.|
plant   273 VVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFV 337

  Fly   382 DKLGRRILLLAS--GI-------SMAISTTAI-------------------GVYFFLQKQDA--- 415
            |:.|||.|::.|  ||       :...|..||                   ..|..|..::|   
plant   338 DRYGRRKLMIISMFGIIACLIILATVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPS 402

  Fly   416 -------------------------AQVV-----------------------SLGWLPVASLCLF 432
                                     |.||                       ..|:|.:..|.|:
plant   403 RWNCMKCLRSECGFCASGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLY 467

  Fly   433 IIMFSIGYGPVPWLMMGELFATDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAG 497
            |::::.|.|.|||::..|::....:|..|.:|..|||:...:|:::|::|...||..|||.||||
plant   468 IVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAG 532

  Fly   498 LTVVGVIFVYFAVPETKGKSLNEIQQEL 525
            .:.:|:.|::..||||||....|:::.|
plant   533 FSTIGLFFIWLLVPETKGLQFEEVEKLL 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10960NP_648605.1 MFS_1 117..474 CDD:284993 103/457 (23%)
MFS 118..508 CDD:119392 117/490 (24%)
INT4NP_001328028.1 MFS_HMIT_like 33..547 CDD:340918 123/526 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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