DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10960 and VGT1

DIOPT Version :9

Sequence 1:NP_648605.1 Gene:CG10960 / 39458 FlyBaseID:FBgn0036316 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_186959.2 Gene:VGT1 / 821117 AraportID:AT3G03090 Length:503 Species:Arabidopsis thaliana


Alignment Length:532 Identity:155/532 - (29%)
Similarity:242/532 - (45%) Gaps:106/532 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 DQEN----LLGNMVHTSTS-------------NNSQKWPQYVAALAA-------AGGAFAAGTVL 101
            |.||    .:|.:|..|:|             |:|   |:..:.|||       |.||...|..:
plant     4 DPENQSISSVGQVVGDSSSGGITAEKEPLLKENHS---PENYSVLAAIPPFLFPALGALLFGYEI 65

  Fly   102 GWTSPA--------------------ETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIG 146
            |.||.|                    :..|:..|..|.        :.:||.:....|       
plant    66 GATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYG--------ALIGSIVAFSVA------- 115

  Fly   147 FLINMIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMYTGEIAQKEI 211
               ::|||:..::.....:::|..:.:.|...|:|...|...|:..|.....||||..|.|..:|
plant   116 ---DIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQI 177

  Fly   212 RGTLGSFFQLMITIGILFVYAVGAGVKIFWLSIICG-------IL--PLIFGAIFFFMPESPTYL 267
            ||.:.|..:....:|::..|.:|:    .|:::|.|       ||  |:|.|....::|.||.:|
plant   178 RGRMISLKEFSTVLGMVGGYGIGS----LWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWL 238

  Fly   268 V-----SKDRSEN----AIKSIQWLRGKEY-DYEPE-----LAELRETDRETKANKVNVWAALNR 317
            :     .:...||    ||:|:..|||... |...|     ||||.....:.:|    .:..|.|
plant   239 LLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEA----TFGELFR 299

  Fly   318 PVTRKALAISMGLMFFQQVCGINAVIFYASRIFLEA--NTGIEAEWATILIGIMQVVATFVSTLV 380
            ....|||.|:.||:.|||:.|..:|::||..|...|  :...:|...:||:|::::|.|.||.:|
plant   300 GKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIV 364

  Fly   381 VDKLGRRILLLASGISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPW 445
            :|::|||.|||.....|.||...:|.|:...|...|       :.||:|.|::..:.:.:||:.|
plant   365 IDRVGRRPLLLCGVSGMVISLFLLGSYYMFYKNVPA-------VAVAALLLYVGCYQLSFGPIGW 422

  Fly   446 LMMGELFATDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTVVGVIFVYFAV 510
            ||:.|:|...::|...|||...|:....:||..|..|.:.||.|..|..|..:.||.:.|:|:.|
plant   423 LMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIV 487

  Fly   511 PETKGKSLNEIQ 522
            |||||.:|.||:
plant   488 PETKGLTLEEIE 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10960NP_648605.1 MFS_1 117..474 CDD:284993 110/382 (29%)
MFS 118..508 CDD:119392 122/415 (29%)
VGT1NP_186959.2 MFS_GLUT10_12_Class3_like 53..498 CDD:340920 140/477 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D430696at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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