DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10960 and ght2

DIOPT Version :9

Sequence 1:NP_648605.1 Gene:CG10960 / 39458 FlyBaseID:FBgn0036316 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_596425.1 Gene:ght2 / 2539977 PomBaseID:SPBC4B4.08 Length:531 Species:Schizosaccharomyces pombe


Alignment Length:484 Identity:123/484 - (25%)
Similarity:212/484 - (43%) Gaps:79/484 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 LAAAGGAFAA--GTVLGWTSPAE--TEIVDRGEGYDFPVDKDQFSWVGSA--------MTLGAAC 140
            ::.||..|.|  |::.|.||..:  ....||   || |: .||:| :.||        :.:|:..
pombe    17 VSMAGWMFGADTGSIGGVTSMRDFRERYADR---YD-PI-TDQYS-LSSARQGLLTGMVNVGSLF 75

  Fly   141 VCIPIGFLINMIGRKWTMLFLVLPFILGWTMLIWAV-NVSMLYASRFILGIAGGAFCVTAPMYTG 204
            .||....:.:..|::.:::.....:|:|..:.:.|| :...:..::...||..||..|.||.|..
pombe    76 GCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQIMVAKIWTGIGIGALSVLAPGYQS 140

  Fly   205 EIAQKEIRGTLGSFFQLMITIGILFV---------------YAVGAGVKIFWLSIICGILPLIFG 254
            |.|...||||:...:||.:|.||...               :.|..|:.:.|     ||:.:| |
pombe   141 ETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHKLHKTAQWRVSIGINLLW-----GIITMI-G 199

  Fly   255 AIFFFMPESPTYLVSKDRSENAIKSIQWLRGKEYDYEPELAEL----RETDRETKANKVNV---- 311
            .:  |:||||.||:...:.|.|::.:.           |.|||    .|...|....|.::    
pombe   200 IL--FLPESPRYLIQVGKDEEAVRVLS-----------ESAELFPDSEEVQNEYHRLKSSIDEEF 251

  Fly   312 ------WAALNRPVTRKALAISMGLMFFQQVCGINAVIFYASRIFLEANTGIEAEW-ATILIGIM 369
                  ||::.....|....:.|.:|..||:.|.|...:|...:...|  ||.:.: :.:::..:
pombe   252 AGGPCSWASIFGKDIRYRTFLGMFVMSLQQLTGNNYFFYYGFSVMQGA--GINSPYLSAMILDAV 314

  Fly   370 QVVATFVSTLVVDKLGRRILLLASGISMAIS---TTAIGVYFFLQKQDAAQVVSLGWLPVASLCL 431
            ....||....|:::.|||..|:..||..:|.   .:|:|......|...:. ...|.:.:...||
pombe   315 NFGCTFGGMYVLERFGRRNPLIIGGIWQSICFFIYSAVGSRALYHKNGTSN-TRAGAVMIVMACL 378

  Fly   432 FIIMFSIGYGPVPWLMMGELFATDIKGFAGSLAGTSNWLLAFVVT--KTFVNLNDGLGIGGTFWL 494
            ||..|:..:.|..::::||.:....:....::|..||||..|:::  ..|:..:.|...|   ::
pombe   379 FIFGFAQTWAPAAYVIVGESYPVRYRSKCAAVATASNWLWNFLISFFTPFIQASIGFKYG---YV 440

  Fly   495 FAGLTVVGVIFVYFAVPETKGKSLNEIQQ 523
            ||...:.|.|.::....||||.:|.||.:
pombe   441 FASCNLTGAIVIFLFAKETKGLTLEEINE 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10960NP_648605.1 MFS_1 117..474 CDD:284993 98/398 (25%)
MFS 118..508 CDD:119392 106/433 (24%)
ght2NP_596425.1 MFS 14..456 CDD:119392 116/469 (25%)
Sugar_tr 15..471 CDD:278511 123/484 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9279
orthoMCL 1 0.900 - - OOG6_100060
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R490
SonicParanoid 1 1.000 - - X26
TreeFam 00.000 Not matched by this tool.
54.830

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