DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10960 and hmit-1.1

DIOPT Version :9

Sequence 1:NP_648605.1 Gene:CG10960 / 39458 FlyBaseID:FBgn0036316 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_507623.1 Gene:hmit-1.1 / 180205 WormBaseID:WBGene00013073 Length:606 Species:Caenorhabditis elegans


Alignment Length:593 Identity:144/593 - (24%)
Similarity:237/593 - (39%) Gaps:163/593 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 VAALAAAG----------GAF-----AAGTVLGWTSPAETEIVDRGEGY--DFPVDKDQFS-W-- 129
            |||.:::|          |.|     ||..:.|:....:|.:|.....|  |.|..|...: |  
 Worm     4 VAAFSSSGQDKPAHTPKLGLFVYILAAASVIGGFLFGYDTSVVSAAMLYMPDAPGLKPMDTVWQE 68

  Fly   130 -----------VGSAMTLGAACVCIPIGFLINMIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYA 183
                       |||.|:          |...:.|||:..:|.....|.:|..:...:||..||..
 Worm    69 VLVSISPGMAAVGSLMS----------GTSSDYIGRRKVILGASAIFTIGALVCAASVNKIMLLV 123

  Fly   184 SRFILGIAGGAFCVTAPMYTGEIAQKEIRGTLGSFFQLMITIGILFVYAVGAG------VKIFW- 241
            .|.:||||.|...:..|:|.||.|...:||.|.:.|.|||:.|.:.....|..      ..:.| 
 Worm   124 GRVLLGIAIGFASMIVPVYLGETAPTHVRGMLVAAFALMISFGQVVANITGGAFSYIDPYNVGWR 188

  Fly   242 LSIICGILPLIFGAI-FFFMPESPTYLVS---KDRSENAIKSI-----QWLRGKEYDYEPELAEL 297
            |......:|.|...: |.|:||:|.:|..   :..:...::.:     :|:   ||    |:||:
 Worm   189 LMFAFAAVPSIIQFVCFMFLPETPRWLYENGFETETREVLEKVYNGDKEWV---EY----EMAEI 246

  Fly   298 --------RETDRETKANKVNVWAALNRPVTRKALAISMGLMFFQQVCGINAVIFYASRIFLEAN 354
                    :|.::...:..| :|..|..|...||..|...|..|||:.|||.:::|.:.|.  .:
 Worm   247 IAFNEDQAKENEKAHASGPV-IWRILKTPHVLKACFIGSMLQAFQQLAGINTILYYTADII--RS 308

  Fly   355 TGIEAE----WATILIGIMQVVATFVSTLVVDKLGRRILLLASGISMAISTTAIGVYFFLQKQDA 415
            :||...    |.::|:.:...:..||...:::|:||||:.|.|...:.:|...|||.|.|...|:
 Worm   309 SGISNNHTTIWISVLLSLCNFIGPFVPMSLIEKVGRRIIFLFSCGLVVLSLVFIGVAFLLVNHDS 373

  Fly   416 AQVV-----------------------------------------------------------SL 421
            |..:                                                           |.
 Worm   374 AATLPANQYGSNFNSSYPDAKGCMAYSNCDYCVTTDACGFCHDANTKQGYCLPAGFDNPEVYSST 438

  Fly   422 G--------------W-----------LPVASLCLFIIMFSIGYGPVPWLMMGELFATDIKGFAG 461
            |              |           ||:.:..::::.||.|:..:||::..|.:....:....
 Worm   439 GSCTNSNGSIANNFKWEKYYCDTKYTLLPIIACGVYLLTFSSGFTSLPWVLNSEFYPMWARSTCV 503

  Fly   462 SLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTVVGVIFVYFAVPETKGKSLNEIQQELA 526
            :::.||||:...::..|:::|...:|..|.|||:|||||:..||:.|.||||||.|:.|::....
 Worm   504 AISTTSNWVFNLIIALTYLSLTQVIGKYGAFWLYAGLTVIAFIFILFLVPETKGYSIEEVEMLFM 568

  Fly   527 GNRSTPQA 534
            ..:...:|
 Worm   569 NKKQRREA 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10960NP_648605.1 MFS_1 117..474 CDD:284993 109/484 (23%)
MFS 118..508 CDD:119392 123/517 (24%)
hmit-1.1NP_507623.1 MFS_HMIT_like 31..554 CDD:340918 129/542 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I2130
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D430696at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.870

Return to query results.
Submit another query.