DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sf3a2 and Sf3a2

DIOPT Version :9

Sequence 1:NP_648603.1 Gene:Sf3a2 / 39456 FlyBaseID:FBgn0036314 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001011986.1 Gene:Sf3a2 / 299620 RGDID:1308627 Length:471 Species:Rattus norvegicus


Alignment Length:307 Identity:207/307 - (67%)
Similarity:228/307 - (74%) Gaps:49/307 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNN 65
            ||||:|.|||||||||||.||:||||:||||||||||||:|||||||||||||||||||||||||
  Rat     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNN 65

  Fly    66 EGSYLAHTQGKKHQDNLARRAAKEAKEAPSSLLAPEKPRVEPKKFVKIGRPGYRVTKQRELSNGQ 130
            ||||||||||||||.||||||||||||||:. .||||.:||.|||||||||||:|||||:...||
  Rat    66 EGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ-PAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQ 129

  Fly   131 QSLLFQVDYPEITESIVPRHRFMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSREVEKSEGK 195
            ||||||:|||||.|.::|||||||||||:||||||:|||||.||||||||.|||||||::|:|||
  Rat   130 QSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGK 194

  Fly   196 FWTHWNRDTKQFFLQFAFKFEPKILPP-----------PPPNLHRAL------------GPPGGF 237
            |||||||:||||||||.||.|....||           |||.|...|            .||||.
  Rat   195 FWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPDALPPPPPGGL 259

  Fly   238 PM-------------PGPPR------------PAMHPMFNGVHPPPP 259
            |:             ||||:            |.:||..:|||||.|
  Rat   260 PLPPMPPTGPAPSGPPGPPQMPPPAPGVHPPAPVVHPPTSGVHPPAP 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sf3a2NP_648603.1 PRP11 1..214 CDD:227571 179/212 (84%)
ZnF_U1 52..85 CDD:197732 31/32 (97%)
SF3A2 129..207 CDD:293440 64/77 (83%)
Sf3a2NP_001011986.1 PRP11 1..217 CDD:227571 181/215 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 21/25 (84%)
ZnF_U1 52..85 CDD:197732 31/32 (97%)
SF3A2 128..206 CDD:293440 63/77 (82%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..471 25/91 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339544
Domainoid 1 1.000 178 1.000 Domainoid score I3481
eggNOG 1 0.900 - - E1_COG5246
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 408 1.000 Inparanoid score I1824
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1320891at2759
OrthoFinder 1 1.000 - - FOG0004594
OrthoInspector 1 1.000 - - oto98395
orthoMCL 1 0.900 - - OOG6_102158
Panther 1 1.100 - - LDO PTHR23205
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3809
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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